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AT2G43340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1685)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1685); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2); Has 272 Blast hits to 272 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AF370604EMBL:AK227821
EMBL:BT025750EMBL:CP002685EnsemblPlants:AT2G43340EnsemblPlants:AT2G43340.1
entrez:818935GeneID:818935Gramene:AT2G43340.1hmmpanther:PTHR31865
hmmpanther:PTHR31865:SF0InterPro:IPR012881KEGG:ath:AT2G43340OMA:SPIASWK
Pfam:PF07939PhylomeDB:Q94JW9Proteomes:UP000006548RefSeq:NP_850394.1
STRING:3702.AT2G43340.1TAIR:AT2G43340UniGene:At.28611UniGene:At.66417
UniProt:Q94JW9
Coordinates (TAIR10) chr2:+:18007769..18008416
Molecular Weight (calculated) 20959.10 Da
IEP (calculated) 4.39
GRAVY (calculated) -0.56
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MCDSDFLSRC SSYEADVDSD SEISTSSFSS CSYSESEEEE INNGFGVVQS KKQTKKLEKK KSNVLLEGYV VDSAVNDDLK RTKSLTDDDL EELKGCVDLG
101: FGFNYEEIPE LCNTLPALEL CYSMSQKFID QDHHHHSSSS PEKKSSVLDS PVSPIASWKI SSPGDNPDDV KARLKFWAQA VACTVRLCT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)