AT2G42950.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.597 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Magnesium transporter CorA-like family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Magnesium transporter CorA-like family protein; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: Magnesium transporter CorA-like family protein (TAIR:AT1G29820.2); Has 661 Blast hits to 660 proteins in 306 species: Archae - 0; Bacteria - 590; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:17864059..17866407 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56982.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||
| Length | 501 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNANHKNGNP GYHNLWTNGL ICAFEFCQGR RKNNTSVHGD SSLRIKKQEC ETDQFGTGED EEHSRSYWRG IGWDRISELV QTVQVDNNWD LRKIDLDEDE 101: ATVAELAAPY WERPLAGPTW WCHLDATHHG IASWLRNAHW LHPAVSLALR DESKLISERM KHIFYEVPVR VAGGLLFELL GQSAGDPFIQ EDDIPIVLRS 201: WQAQNFLVTA LHVKGFALNI SVLGITEVQE MLIAGGACIP RTVHELIAHL ACRLARWDDR LFRKYIFGAA DEVELMFMNK RLYEDPNLFT TILNQEIRRL 301: STQVIRVKWS LHAREEIVFE LLQQLKGNRT KDLLEGIKKS TRDMINEQEA VRGRLFTIQD VMQNTVRAWL QDQSLTVTHN LGIFGGVGLL ITIVTGLFGI 401: NVDGIPGAKD FPQAFALFSV VLFVSGLVLV VAGLIYLGLK EPVAEENVET RKLELDEMVK KFQQEAESHA QVCKKVPQNI ERTTSRSRMI VHDPNGYVLL 501: E |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)