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AT2G41440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUNMeggNOG:ENOG41106Q7EMBL:CP002685EnsemblPlants:AT2G41440
EnsemblPlants:AT2G41440.1entrez:818742ExpressionAtlas:F4IK16GeneID:818742
Gramene:AT2G41440.1InParanoid:F4IK16PaxDb:F4IK16ProteinModelPortal:F4IK16
Proteomes:UP000006548RefSeq:NP_181675.2TAIR:AT2G41440UniGene:At.73715
UniProt:F4IK16
Coordinates (TAIR10) chr2:+:17271792..17274065
Molecular Weight (calculated) 33499.80 Da
IEP (calculated) 7.76
GRAVY (calculated) -0.91
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MGREGDQMKR KRRDLTNKTR GPCNFCEFSS SRYGCSSEDK LQEQDNEAVL RKEVERLRLL IKRMTGKEDI VSFTELLALQ SHLMDVRSIV LEQKKEVELE
101: EAERPHKQKK EAEHDADGMR RGVLVPCKFS ASSLGERQED PNGEAPLLQM QREFEQRSSE SLQSEFDKLW LFNERMNGRE LEGMTSFDLS ILHIQILRAL
201: RALIDQKLGP RQEHRAWQRG ELVCHTDKES VSGLAEPGRC SSDNDKDADS SLQCRLLLVS RKLRRFHNSY QRKSMPETRS VCQSRVTSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)