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AT2G38450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.969
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7GFeggNOG:ENOG410YRE2EMBL:CP002685EnsemblPlants:AT2G38450
EnsemblPlants:AT2G38450.1entrez:818426Gene3D:1.25.40.10GeneID:818426
Gramene:AT2G38450.1hmmpanther:PTHR36792hmmpanther:PTHR36792:SF2InParanoid:F4ISY9
InterPro:IPR006597InterPro:IPR011990KEGG:ath:AT2G38450OMA:GNITMQV
PaxDb:F4ISY9Pfam:PF08238PRIDE:F4ISY9ProteinModelPortal:F4ISY9
Proteomes:UP000006548RefSeq:NP_565889.2SMART:SM00671SMR:F4ISY9
SUPFAM:SSF81901TAIR:AT2G38450UniGene:At.37292UniProt:F4ISY9
Coordinates (TAIR10) chr2:+:16102016..16102683
Molecular Weight (calculated) 15019.80 Da
IEP (calculated) 10.47
GRAVY (calculated) -0.53
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKSIPVKTG LRGASAAVAG FIKSSKPIRP ISSMDSSDKD SSSTTTTSET TRRFVPLSSV VSDCAKRWFK DTLEEAKAGN ITMQVLLGQM YYSGYGVPKD
101: ARKGRLWITK ASRVRSSVWK VIDKRPGYNA SDSDSESD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)