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AT2G37200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.913
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G28370.1); Has 205 Blast hits to 205 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1611eggNOG:ENOG410JW8ZEMBL:AC006260EMBL:AK228932
EMBL:BT010678EMBL:BT010966EMBL:CP002685EnsemblPlants:AT2G37200
EnsemblPlants:AT2G37200.1entrez:818297GeneID:818297GO:GO:0005886
GO:GO:0016021Gramene:AT2G37200.1hmmpanther:PTHR32021hmmpanther:PTHR32021:SF1
HOGENOM:HOG000243377InParanoid:Q6NPF8InterPro:IPR006702KEGG:ath:AT2G37200
OMA:PPVRMKDPaxDb:Q6NPF8Pfam:PF04535Pfam:Q6NPF8
PhylomeDB:Q6NPF8PIR:G84789PRIDE:Q6NPF8PRO:PR:Q6NPF8
Proteomes:UP000006548RefSeq:NP_181257.2STRING:3702.AT2G37200.1TAIR:AT2G37200
TMHMM:TMhelixUniGene:At.37457UniProt:Q6NPF8
Coordinates (TAIR10) chr2:-:15622098..15623047
Molecular Weight (calculated) 19235.50 Da
IEP (calculated) 8.23
GRAVY (calculated) 0.66
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNVSRPAIH PVDALPVAPT AGAIDRPPVR MKDVQGMPGT TGGLILRLSQ FVPALISVSV MVTTSDFRSA TAFCCLVLAV SLQSLWSLSL FIIDAYALLV
101: RRSLRNHSVV QCFTIGDGVT STLTFAAASA SAGITVLIND LGQCNVNHCT RFETATAMAF ISWFAVSPSF ILNFWSLATH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)