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AT2G34840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Coatomer epsilon subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Coatomer epsilon subunit; FUNCTIONS IN: protein transporter activity, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: COPI vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: Coatomer epsilon subunit (TAIR:AT1G30630.1); Has 446 Blast hits to 446 proteins in 187 species: Archae - 0; Bacteria - 10; Metazoa - 175; Fungi - 107; Plants - 92; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Protein Annotations
BioGrid:3395DNASU:818049eggNOG:ENOG410XS5PeggNOG:KOG3081
EMBL:AC004238EMBL:AY075627EMBL:AY142051EMBL:CP002685
EnsemblPlants:AT2G34840EnsemblPlants:AT2G34840.1entrez:818049ExpressionAtlas:O64748
Gene3D:1.25.40.10GeneID:818049Genevisible:O64748GO:GO:0005198
GO:GO:0005829GO:GO:0006890GO:GO:0015031GO:GO:0030663
hmmpanther:PTHR10805hmmpanther:PTHR10805:SF1HOGENOM:HOG000205825InParanoid:O64748
InterPro:IPR006822InterPro:IPR011990OMA:NIAESWVPANTHER:PTHR10805
PaxDb:O64748Pfam:O64748Pfam:PF04733PhylomeDB:O64748
PIR:T00466PIRSF:PIRSF016478PRIDE:O64748PRO:PR:O64748
ProteinModelPortal:O64748Proteomes:UP000006548Reactome:R-ATH-199997Reactome:R-ATH-6807878
RefSeq:NP_181030.1SMR:O64748STRING:3702.AT2G34840.1SUPFAM:SSF48452
TAIR:AT2G34840UniGene:At.37752UniProt:O64748
Coordinates (TAIR10) chr2:+:14702603..14704165
Molecular Weight (calculated) 32660.10 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.11
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAMGAGPDH LFNLRNNFYL GAYQTAINNS EIANLSPENA VERDCLVFRS YIALGSYQLV ISEIDESAAT PLQAVKLLAM YLSTPQNKES TISSLKEWLA
101: DSTIGNNDTL RLIAGIIFMH EEDYNETLKH THAGGTMDLY ALNVQIFIKM HRAEYAEKQL RVMQQIDEDH TLTQLASAWL NLAVGGSKIQ EAYLIFEDFS
201: EKYPMTCLIL NGKAVCCMQM GNFDEAETLL LEALNKDAKD PETLANLVVC SLHVGKSSSR HLSQLKLSHP EHILVKRVSS AEDNFERAVQ LVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)