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AT2G27450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.944
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nitrilase-like protein 1
Curator
Summary (TAIR10)
Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis.
Computational
Description (TAIR10)
nitrilase-like protein 1 (NLP1); CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), N-carbamoylputrescine amidase (InterPro:IPR017755); BEST Arabidopsis thaliana protein match is: beta-ureidopropionase (TAIR:AT5G64370.1); Has 12192 Blast hits to 12142 proteins in 2277 species: Archae - 244; Bacteria - 8385; Metazoa - 492; Fungi - 451; Plants - 313; Viruses - 11; Other Eukaryotes - 2296 (source: NCBI BLink).
Protein Annotations
EMBL:AK317300EnsemblPlants:AT2G27450EnsemblPlants:AT2G27450.1entrez:817290
ExpressionAtlas:B9DGV9Gene3D:3.60.110.10GeneID:817290GO:GO:0006596
GO:GO:0050126Gramene:AT2G27450.1gramene_plant_reactome:1119304gramene_plant_reactome:6876171
hmmpanther:PTHR23088hmmpanther:PTHR23088:SF26HOGENOM:HOG000222699InterPro:IPR003010
InterPro:IPR017755KEGG:00330+3.5.1.53KEGG:ath:AT2G27450KO:K12251
Pfam:PF00795Pfscan:PS50263PRIDE:B9DGV9PROSITE:PS50263
ProteinModelPortal:B9DGV9RefSeq:NP_565650.1SUPFAM:SSF56317TAIR:AT2G27450
tair10-symbols:ATNLP1tair10-symbols:CPAtair10-symbols:NLP1TIGRfam:TIGR03381
TIGRFAMs:TIGR03381UniGene:At.21659unipathway:UPA00534UniProt:B9DGV9
Coordinates (TAIR10) chr2:-:11737666..11739577
Molecular Weight (calculated) 33534.80 Da
IEP (calculated) 5.93
GRAVY (calculated) -0.29
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: METEGRRREV VVSSLQFACS DDISTNVAAA ERLVREAHAK GANIILIQEL FEGYYFCQAQ REDFFKRAKP YKNHPTIARM QKLAKELGVV IPVSFFEEAN
101: TAHYNSIAII DADGTDLGIY RKSHIPDGPG YQEKFYFNPG DTGFKVFQTK FAKIGVAICW DQWFPEAARA MVLQGAEILF YPTAIGSEPQ DQGLDSRDHW
201: RRVMQGHAGA NVVPLVASNR IGKEIIETEH GPSQITFYGT SFIAGPTGEI VAEADDKSEA VLVAQFDLDM IKSKRQSWGV FRDRRPDLYK VLLTMDGNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)