AT2G26870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : non-specific phospholipase C2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
non-specific phospholipase C2 (NPC2); FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: triglyceride biosynthetic process, phospholipid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C1 (TAIR:AT1G07230.1); Has 2169 Blast hits to 2123 proteins in 400 species: Archae - 32; Bacteria - 1806; Metazoa - 0; Fungi - 127; Plants - 155; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11457117..11459355 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57684.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 514 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIKAFALIQ LLSVTILYNH VHATSPIKTI VVVVMENRSF DHMLGWMKKL NPEINGVDGS ESNPVSVSDP SSRKIKFGSG SHYVDPDPGH SFQAIREQVF 101: GSNDTSMDPP PMNGFVQQAY SEDPSGNMSA SVMNGFEPDK VPVYKSLVSE FAVFDRWFAS VPSSTQPNRM FVHSGTSAGA TSNNPISLAK GYPQRTIFDN 201: LDDEEFSFGI YYQNIPAVLF YQSLRKLKYV FKFHSYGNSF KDHAKQGKLP AYTVIEQRYM DTLLEPASDD HPSHDVYQGQ KFIKEVYETL RASPQWNETL 301: LIITYDEHGG YFDHVPTPVR NVPSPDGIVG PDPFLFQFNR LGIRVPTIAV SPWIEKGTVV HGPNGSPFPS SEYEHSSIPA TVKKLFNLSS PFLTKRDEWA 401: GTFENILQIR KEPRTDCPET LPEPVKIRMG EANEKALLTE FQQELVQLAA VLKGDNMLTT FPKEISKGMT VIEGKRYMED AMKRFLEAGR MALSMGANKE 501: ELVHMKTSLT GRRP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)