AT2G21150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : XAP5 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
XAP5 family protein involved in light regulation of the circadian clock and photomorphogenesis. Nuclear localized. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
XAP5 CIRCADIAN TIMEKEEPER (XCT); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, response to blue light, response to red light, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: XAP5 protein (InterPro:IPR007005); Has 1721 Blast hits to 1474 proteins in 237 species: Archae - 2; Bacteria - 40; Metazoa - 614; Fungi - 190; Plants - 85; Viruses - 22; Other Eukaryotes - 768 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9065397..9067921 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39241.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 337 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGMGDGYVG TAQDAVRIRR LQKQREAERK KIQELKSKSA SGNDQSGLLQ FGTSSCEILD TAFKKETVGL VTREEYVEKR VNIRNKFEEE EKEKLQKLQQ 101: EEEELQLEKR NKKRKIKGSS RLSFAEDFEN GSDEDDGENK SSGTGNLRCG KLGKDPSVET NFLPDSEREA EEQAERERLK KQWLREQEQI KNEPLEITYS 201: YWDGTGHRRV IQVRKGDPIG NFLRAVQQQL APDFREIRTA SVENLLYVKE DLIIPHQHSF YELIINKARG KSGPLFHFDV HEDVRTIADA TIEKDESHAG 301: KVVERHWYEK NKHIFPASRW EIYDPTKKWE RYTVHGD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)