AT2G17990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.747 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (endoplasmic reticulum marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7827480..7828596 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 38272.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.45 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||
| Length | 338 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGKEETDVS AQGSLTREAT EIWRSELESR RFQVDSLEAE LVDVKAYLEF GSEEDARKEL GVLSGRVRST ATMLRYLRSK ARVLAIPDDL ANVSCGVEQI 101: EELKGLNLVE KDGGSSSSDG ARNTNPETRR YSGSLGVEDG AYTNEMLQSI EMVTDVLDSL VRRVTVAESE SAVQKERALL GEEEISRKTI QIENLSVKLE 201: EMERFAYGTN SVLNEMRERI EELVEETMRQ REKAVENEEE LCRVKREFES LKSYVSTFTN VRETLLSSER QFKTIEELFE RLVTKTTQLE GEKAQKEVEV 301: QKLMEENVKL TALLDKKEAQ LLALNEQCKV MALSASNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)