AT2G16980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: tetracycline transporter activity; INVOLVED IN: response to antibiotic, tetracycline transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G16970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7376376..7380525 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44377.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.88 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.51 | ||||||||||||||||||||||||||||||||
| Length | 408 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVFRLGELR HLLVTVFLSG LAEYLIRPVM TDVTVAAVCS GLDDSCSLAV YLTGVQQVTV GMGTMVMMPV IGNLSDRYGI KAMLTLPMCL SVLPPAILGY 101: RRDTNFFYAF YVIKTLFDMV CQGTIDCLAN AYVAKNVHGT KRISMFGILA GVSSISGVCA SLSARFLSIA STFQVAAISL FIGLVYMRVF LKERLQDADD 201: DDEADSGGCR SHQEVHNGGD LKMLTEPILR DAPTKTHVFN SKYSSWKDMV SLINNSTILI QALVVTFFAT FSESGRGSAL MYFLKARFGF NKNDFAELFL 301: LVTIIGSISQ LFILPTLSST IGERKVLSTG LLMEFFNATC LSVAWSPWVP YAMTMLVPGA MFVMPSVCGI ASRQVGSSEQ GKVQGCISGV RAFAQVVAPF 401: VYSPLTGK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)