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AT2G16050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G20990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHZ5eggNOG:ENOG410YAGHEMBL:CP002685EnsemblPlants:AT2G16050
EnsemblPlants:AT2G16050.1entrez:816102GeneID:816102Gramene:AT2G16050.1
hmmpanther:PTHR13871hmmpanther:PTHR13871:SF51InParanoid:F4IJF7InterPro:IPR004146
KEGG:ath:AT2G16050OMA:NACERIVPaxDb:F4IJF7Pfam:PF03107
PRIDE:F4IJF7ProteinModelPortal:F4IJF7Proteomes:UP000006548RefSeq:NP_179203.2
SMR:F4IJF7SUPFAM:SSF57889TAIR:AT2G16050UniGene:At.52761
UniProt:F4IJF7
Coordinates (TAIR10) chr2:+:6980450..6981939
Molecular Weight (calculated) 27342.80 Da
IEP (calculated) 8.61
GRAVY (calculated) -0.39
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MKYADISHFS HPQHNLKFDY TEKPFKCDGC NEVGIGSRYR CSGDNHGSCD FDLHAHCALP SASITHPFYK KCTFQFVARP PGNERRYCNA CEKDVSGFLY
101: HCKACGFDLH PCCAMLPMVL DDGETNLFLY RKVSSSCHRC GKKGRSWSYR SSCKKYNLHV ACVREMLVEN WRELYTGQHG KSIEHKSLVL KNTLEHHHRS
201: SRKGKVQKCC EIAGIAVQFV ISAVLGDPTT LIAGVVGSLI SRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)