AT2G04940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : scramblase-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
scramblase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Scramblase (InterPro:IPR005552); Has 427 Blast hits to 416 proteins in 142 species: Archae - 0; Bacteria - 29; Metazoa - 228; Fungi - 113; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1736671..1740254 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44124.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.89 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 392 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIYLSRRSLS SLLRSGFNLR GDLTAAAVSC SSLFSDADGG IKKLHSRAGN AVLWRNSQLC SSQGSFFGRG GQVSGSVFRC FCSGSDTSPP SLDRKFLAQL 101: WVADKKKLKA MEKRYKKASK HRNYTENDGF DVHFETVEPT VEQPPVSQSM SGLLKPKTSD EAKIATLLAR SNLLVTRDIE WANLVLGFEQ ENRYIVVDVC 201: YPEAPVGSIR EQSNLLARQL LRTRRPFVAS ITDALGNELF RVRRPFWWLT SSIYAEIDGE EIGVVHRRWH LWRRIYDLYL GNNQFAVVEN PGFWNWTFTV 301: KDADGEVLAQ IDRDWRGFGF EIFTDAGQYV IRFGKADAAA KTGPATLVEE LEVKRPLTLS ERAVVLTLAI SLDNDYFSRH GGWGIPFMAV GE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)