AT1G80530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.908 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G34950.1); Has 2493 Blast hits to 2437 proteins in 753 species: Archae - 26; Bacteria - 1395; Metazoa - 19; Fungi - 170; Plants - 599; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:30278224..30280247 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60711.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.67 | ||||||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKLAEKSGS RPPWVGLAAA AWVQVSAGSG STFPLYSSAL KSVLGFSQQQ VTILGVACDL GENMGLLPGY ASNKLPPWSM LLIGASSCFL GFGVLWLSVS 101: QIVLGLPFWL LFVALALATN SNSWFGTASL VTNMRNFPMS RGPVAGLLKG YIGISGAAFT VLFSMVLHHS AMDLLLFLTV GIPVICLTVM YFIRPCIPAT 201: GEDPSEPMYF AFLLVTSILF AAYLVVTTVL SEVFILPSIL KYVLVAIMVL LLLSPLAVPI KMTLFRSNAK SSPLGSSDNL AKEEGTHEEP LLTPSTSASN 301: LGPIFEGDDE SDMEILLAEA EGAVKKKRKP RRGEDFKFGQ VFVKADFWLL WFVYFLGMGS GVTVSNNLAQ IGFAFGIKDT TILLCLFSFF NFIGRLASGA 401: ISEHFVRSRT LPRTLWMGAA QLVMVFTFLL FAMAIDHTIY VATALIGICM GFQFLSIATI SELFGLRHFG INFNFILLGN PLGATIFSAI LAGYIYDKEA 501: DKQGKMTCIG PDCFRVTFLV LAGVCGLGTL LSIILTVRIR PVYQALYASG SFRLQPQSTG H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)