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AT1G79910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Regulator of Vps4 activity in the MVB pathway protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YG52eggNOG:KOG2027EMBL:AY099682EMBL:AY128862
EMBL:CP002684EnsemblPlants:AT1G79910EnsemblPlants:AT1G79910.1entrez:844330
ExpressionAtlas:Q8L402GeneID:844330GO:GO:0015031Gramene:AT1G79910.1
hmmpanther:PTHR12161hmmpanther:PTHR12161:SF14IntAct:Q8L402InterPro:IPR005061
OMA:QFVNPEFPANTHER:PTHR12161Pfam:PF03398PhylomeDB:Q8L402
Proteomes:UP000006548RefSeq:NP_178109.2SMR:Q8L402STRING:3702.AT1G79910.1
TAIR:AT1G79910UniGene:At.43076UniProt:Q8L402
Coordinates (TAIR10) chr1:+:30055050..30057011
Molecular Weight (calculated) 43775.90 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.87
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)