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AT1G79820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16855027 (2006): Golgi Golgi apparatus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SUPPRESSOR OF G PROTEIN BETA1 (SGB1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G67300.1); Has 34820 Blast hits to 34269 proteins in 2224 species: Archae - 604; Bacteria - 18622; Metazoa - 4518; Fungi - 6808; Plants - 2676; Viruses - 2; Other Eukaryotes - 1590 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AK317667EnsemblPlants:AT1G79820
EnsemblPlants:AT1G79820.1EnsemblPlants:AT1G79820.2entrez:844321ExpressionAtlas:B9DHW0
GeneID:844321GO:GO:0016021GO:GO:0022891Gramene:AT1G79820.1
Gramene:AT1G79820.2hmmpanther:PTHR23503hmmpanther:PTHR23503:SF19InterPro:IPR003663
InterPro:IPR005828InterPro:IPR005829InterPro:IPR020846OMA:MELCVES
PaxDb:B9DHW0Pfam:PF00083Pfam:Q2V4B9Pfscan:PS50850
PhylomeDB:B9DHW0PRIDE:B9DHW0PRINTS:PR00171PROSITE:PS00216
PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:B9DHW0RefSeq:NP_178100.3
RefSeq:NP_850983.1scanprosite:PS00216scanprosite:PS00217SMR:B9DHW0
STRING:3702.AT1G79820.1SUPFAM:SSF103473TAIR:AT1G79820tair10-symbols:SGB1
TIGRfam:TIGR00879TIGRFAMs:TIGR00879TMHMM:TMhelixUniGene:At.14743
UniGene:At.48399UniProt:B9DHW0UniProt:Q2V4B9
Coordinates (TAIR10) chr1:-:30022581..30026771
Molecular Weight (calculated) 52443.80 Da
IEP (calculated) 8.97
GRAVY (calculated) 0.65
Length 495 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSVRRTYTI MRGRHIDKRV PSKEFLSALD KAETAVRLPT GTGKDCGNPS WKRSLPHVLV ASLTSLLFGY HLGVVNETLE SISIDLGFSG NTIAEGLVVS
101: TCLGGAFIGS LFSGLVADGV GRRRAFQLSA LPMIVGASVS ASTESLMGML LGRFLVGIGM GIGPSVTALY VTEVSPAYVR GTYGSSTQIA TCIGLLGSLF
201: AGIPAKDNLG WWRICFWIST VPAAMLAVFM ELCVESPQWL FKRGRAAEAE AVFEKLLGGS YVKAAMAELV KSDRGDDADS AKLSELLFGR SFRVVFIGST
301: LFALQQLSGI NAVFYFSSTV FKKAGVPSAS ANICVGVCNL LGSTVAVVLM DKLGRKVLLI GSFAGMAVSL GLQAIAYTSL PSPFGTLFLS VGGMLLFVLS
401: FATGAGPVPS LLLSEICPGR LRATALAVCL AVHWVINFFV GLLFLRMLEQ LGSVLLNAIF GFFCVVAVIF VQKNVVETKG KSLQEIEISL LSSTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)