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AT1G76650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
plasma membrane 0.001
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calmodulin-like 38
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
calmodulin-like 38 (CML38); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G76640.1); Has 14301 Blast hits to 11244 proteins in 1181 species: Archae - 0; Bacteria - 48; Metazoa - 5820; Fungi - 2427; Plants - 3932; Viruses - 0; Other Eukaryotes - 2074 (source: NCBI BLink).
Protein Annotations
BioGrid:29217eggNOG:COG5126eggNOG:KOG0027EMBL:AC010718
EMBL:AY086972EMBL:BT002421EMBL:BT006556EMBL:CP002684
EnsemblPlants:AT1G76650EnsemblPlants:AT1G76650.1EnsemblPlants:AT1G76650.3entrez:843998
Gene3D:1.10.238.10GeneID:843998Genevisible:Q9SRE6GO:GO:0005509
GO:GO:0005886GO:GO:0009611hmmpanther:PTHR10891hmmpanther:PTHR10891:SF592
HOGENOM:HOG000233018InParanoid:Q9SRE6InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247iPTMnet:Q9SRE6KEGG:ath:AT1G76650KO:K13448
OMA:IEECQAMPaxDb:Q9SRE6Pfam:PF13499Pfam:PF13833
Pfam:Q9SRE6Pfscan:PS50222PhylomeDB:Q9SRE6PIR:G96794
PRIDE:Q9SRE6PRO:PR:Q9SRE6PROSITE:PS00018PROSITE:PS50222
ProteinModelPortal:Q9SRE6Proteomes:UP000006548RefSeq:NP_001077834.1RefSeq:NP_001185413.1
RefSeq:NP_177791.1scanprosite:PS00018SMART:SM00054SMR:Q9SRE6
STRING:3702.AT1G76650.1SUPFAM:SSF47473TAIR:AT1G76650tair10-symbols:CML38
UniGene:At.34632UniGene:At.71993UniProt:Q9SRE6
Coordinates (TAIR10) chr1:-:28766909..28767442
Molecular Weight (calculated) 20113.70 Da
IEP (calculated) 4.39
GRAVY (calculated) -0.72
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNNTQPQSS FKKLCRKLSP KREDSAGEIQ QHNSSNGEDK NRELEAVFSY MDANRDGRIS PEELQKSFMT LGEQLSDEEA VAAVRLSDTD GDGMLDFEEF
101: SQLIKVDDEE EKKMELKGAF RLYIAEGEDC ITPRSLKMML KKLGESRTTD DCRVMISAFD LNADGVLSFD EFALMMR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)