AT1G75800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pathogenesis-related thaumatin superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G20030.2); Has 1631 Blast hits to 1621 proteins in 190 species: Archae - 2; Bacteria - 41; Metazoa - 64; Fungi - 79; Plants - 1416; Viruses - 4; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28458889..28460447 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34885.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 330 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALPLPLIFL IFSHLFVSGV RSTSFIMVNK CEYTVWPGLL SNAGVPPLPT TGFVLQKGEE RTISAPTSWG GRFWGRTQCS TDTDGKFTCL TGDCGSGTLE 101: CSGSGATPPA TLAEFTLDGS NGLDFYDVSL VDGYNVPMLV APQGGSGLNC SSTGCVVDLN GSCPSELKVT SLDGRGKQSM GCKSACEAFR TPEYCCSGAH 201: GTPDTCKPSS YSLMFKTACP RAYSYAYDDQ SSTFTCAESP NYVITFCPTP NTSQKSSQDQ SPDPKPTTPT GTSSTTPAGD SSTTWSPVDT SMIYEGALDQ 301: NKGSPSTCHL SLCGITVTLA LAFCRMWRLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)