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AT1G72810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxal-5'-phosphate-dependent enzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity, threonine synthase activity; INVOLVED IN: threonine biosynthetic process, metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Threonine synthase (InterPro:IPR004450), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT4G29840.1); Has 6773 Blast hits to 6773 proteins in 2056 species: Archae - 400; Bacteria - 4271; Metazoa - 80; Fungi - 26; Plants - 85; Viruses - 0; Other Eukaryotes - 1911 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G72810-MONOMEREC:4.2.3.1eggNOG:COG0498eggNOG:ENOG410IITN
EMBL:AC008017EMBL:AY099629EMBL:BT002151EMBL:CP002684
EnsemblPlants:AT1G72810EnsemblPlants:AT1G72810.1entrez:843612GeneID:843612
Genevisible:Q9SSP5GO:GO:0004795GO:GO:0009088GO:GO:0009507
GO:GO:0030170Gramene:AT1G72810.1gramene_pathway:4.2.3.1gramene_pathway:HOMOSER-THRESYN-PWY
gramene_plant_reactome:1119262gramene_plant_reactome:6874871hmmpanther:PTHR10314hmmpanther:PTHR10314:SF125
HOGENOM:HOG000076502InParanoid:Q9SSP5InterPro:IPR000634InterPro:IPR001926
InterPro:IPR004450KEGG:ath:AT1G72810KO:K01733OMA:SKAIMCA
PaxDb:Q9SSP5Pfam:PF00291Pfam:Q9SSP5PhylomeDB:Q9SSP5
PIR:A96753PRIDE:Q9SSP5PRO:PR:Q9SSP5PROSITE:PS00165
ProteinModelPortal:Q9SSP5Proteomes:UP000006548RefSeq:NP_565047.1scanprosite:PS00165
SMR:Q9SSP5STRING:3702.AT1G72810.1SUPFAM:SSF53686TAIR:AT1G72810
TIGRfam:TIGR00260TIGRFAMs:TIGR00260UniGene:At.11666UniPathway:UPA00050
UniProt:Q9SSP5
Coordinates (TAIR10) chr1:-:27398760..27400393
Molecular Weight (calculated) 56927.90 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.21
Length 516 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFSLPHSA TYFPSHSETS LKPHSAASFT VRCTSASPAV PPQTPQKPRR SPDENIRDEA RRRPHQLQNL SARYVPFNAP PSSTESYSLD EIVYRSQSGA
101: LLDVQHDFAA LKRYDGEFWR NLFDSRVGKT NWPYGSGVWS KKEWVLPEID DDDIVSAFEG NSNLFWAERF GKQYLQMNDL WVKHCGISHT GSFKDLGMSV
201: LVSQVNRLRK MNKPVIGVGC ASTGDTSAAL SAYCASAGIP SIVFLPADKI SMAQLVQPIA NGAFVLSIDT DFDGCMHLIR EVTAELPIYL ANSLNSLRLE
301: GQKTAAIEIL QQFNWQVPDW VIVPGGNLGN IYAFYKGFHM CKELGLVDRI PRLVCAQAAN ANPLYLHYKS GFKEDFNPLK ANTTFASAIQ IGDPVSIDRA
401: VYALKKSNGI VEEATEEELM DATALADSTG MFICPHTGVA LTALMKLRKS GVIGANDRTV VVSTAHGLKF TQSKIDYHSK NIKEMACRLA NPPVKVKAKF
501: GSVMDVLKEY LKSNDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)