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AT1G68730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zim17-type zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zim17-type zinc finger protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); BEST Arabidopsis thaliana protein match is: Zim17-type zinc finger protein (TAIR:AT5G27280.1); Has 375 Blast hits to 375 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 113; Plants - 110; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121WIeggNOG:KOG3277EMBL:AB493527EMBL:AC008075
EMBL:AC011914EMBL:CP002684EnsemblPlants:AT1G68730EnsemblPlants:AT1G68730.1
entrez:843204GeneID:843204GO:GO:0008270Gramene:AT1G68730.1
hmmpanther:PTHR20922hmmpanther:PTHR20922:SF17HOGENOM:HOG000005783InterPro:IPR007853
InterPro:IPR024158KEGG:ath:AT1G68730OMA:SCGERTKPANTHER:PTHR20922
Pfam:PF05180Pfscan:PS51501PhylomeDB:Q9S7X9PIR:A96712
PROSITE:PS51501Proteomes:UP000006548RefSeq:NP_177040.2SMR:Q9S7X9
STRING:3702.AT1G68730.1TAIR:AT1G68730UniGene:At.52440UniProt:Q9S7X9
Coordinates (TAIR10) chr1:-:25810321..25811128
Molecular Weight (calculated) 19165.70 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.48
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MANTAAGWSP VLAPIYSPVN TKPINFHFSA SFYKPPRPFY KQQNPISALH RSKTTRVIEV VTPKQRNRSF SVFGSLADDS KLNPDEESND SAEVASIDIK
101: LPRRSLQVEF TCNSCGERTK RLINRHAYEK GLVFVQCAGC LKHHKLVDNL GLIVEYDFRE TSKDLGTDHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)