AT1G64810.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Arabidopsis thaliana protein of unknown function (DUF794) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
chloroplast APO1 | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ACCUMULATION OF PHOTOSYSTEM ONE 1 (APO1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT5G57930.2); Has 142 Blast hits to 119 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:24086882..24088276 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49629.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.47 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||
| Length | 436 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLVSPACRG VYLQTIDPKP IDFSARASYA LCFQIPTSIP KRECLMRLGT VFCFNQKHRE QTSFKKRYVS TQNVDLPPIL PKNKKKPYPI PFKQIQEEAR 101: KDKKLAQMGI EKQLDPPKNG LLVPNLVPVA DQVIDNWKLL IKGLAQLLHV VPVFACSECG AVHVANVGHN IRDCNGPTNS QRRGSHSWVK GTINDVLIPV 201: ESYHMYDPFG RRIKHETRFE YERIPALVEL CIQAGVEIPE YPCRRRTQPI RMMGKRVIDR GGYHKEPEKP QTSSSLSSPL AELDTLGVFE RYPPPTPEDI 301: PKIAQETMDA YEKVRLGVTK LMRKFTVKAC GYCSEVHVGP WGHSVKLCGE FKHQWRDGKH GWQDALVDEV FPPNYVWHVR DLKGNPLTGN LRRFYGKAPA 401: LVEICMHSGA RVPQRYKAMM RLDIIVPDSQ EADMVA |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)