AT1G63860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G63870.1); Has 21728 Blast hits to 14713 proteins in 764 species: Archae - 21; Bacteria - 1218; Metazoa - 3321; Fungi - 679; Plants - 12992; Viruses - 308; Other Eukaryotes - 3189 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23701920..23706005 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115440.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1004 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSLLASSSSC NYKYIVFPSF HGPDVRKTLL SHMRKQFDFN GITMFDDQGI ERSEEIAPSL KKAIKESRIS IVILSKKYAS SSWCLDELVD ILKRKKAMKQ 0101: IVMTVFYGVE PFEVRNQTGE FGIAFNETCA RKTDEERQKW SKALNEVANI AGEDFLRCDN EAKRIEKIAR DVSNKLNATP CRDFDGMVGL EAHLTEMESL 0201: LDLDYDGVKM VGISGPAGIG KTTIAKALQS RFSNRFQLTC FVDNLRGSYL SGLDELRLQE QFLSNVLNQD GIRINHSGVI EERLCKLRVL IILDDVDHIK 0301: QLEALANKTT WFGPRSRIVV TTENKELLQQ EWKSYPQKGF QWLALRVTQL CGKLPLGLCM VGSSLRGKNE EGWEEVICSL ENNIDRDIEE VLRVGYESLD 0401: DNEKTLFLHI AIFFNNQYVH LVERLFADGD LDFKRALKIL ENRSLIEISF SSRIVMHRLL QQVGKKAIQK QEPLKRQILM DAREICYVLE NDTDTRYVSA 0501: ILFDISGIDE VYIREGAFRR MSNLRFLTVY KSKDDGNDIM DIPKRMEFPR RLRILKWEAY PNKCFPPKFH PEYLVELVMK NSKLEYLWQG TQPLKNLKEM 0601: NLKGSSNLKA LPNLSNATKM EILKLSDCKS LVEIPSSFSH LQRLEKLRLR GCISLEVIPA DMNLEFLYDL DMRGCSRLRN IPVMSTRLYF LNISETAVED 0701: VSASITSWHH VTHLSINSSA KLRGLTHLPR PVEFLDLSYS GIERIPNCIK DRYLLKSLTI SGCRRLTSLP ELPASLKFLV ADDCESLETV FCPFKTSKCW 0801: PFNIFEFTNC FKLDQEARRA IIQRPFFHGT TLLPGREVPA EFDHRGRGNT LTIPLERKRL IEEESIEDNY ESGSDQASEE DSIEENYGSG SDHQASEEDS 0901: IEGSYESGSE QASEEDSIQE ENYEESIQES YEAGSDQVSE EESYESGSEQ ASEDENEFEH SEEASEDYKW KMNNDMMIFS CLQIISEKNR REISKYHLFK 1001: ARTM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)