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AT1G58602.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.680
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LRR and NB-ARC domains-containing disease resistance protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G59218.2); Has 17665 Blast hits to 14865 proteins in 568 species: Archae - 8; Bacteria - 610; Metazoa - 659; Fungi - 97; Plants - 16125; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
Protein Annotations
BioGrid:27445eggNOG:COG4886eggNOG:KOG4658EMBL:AB078516
EMBL:AY049262EMBL:CP002684EnsemblPlants:AT1G58602EnsemblPlants:AT1G58602.1
EnsemblPlants:AT1G58602.2entrez:842220ExpressionAtlas:Q8W3K0Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:842220GO:GO:0005524GO:GO:0006952
GO:GO:0043531Gramene:AT1G58602.1Gramene:AT1G58602.2hmmpanther:PTHR23155
hmmpanther:PTHR23155:SF549HOGENOM:HOG000237753InParanoid:Q8W3K0InterPro:IPR002182
InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT1G58602PaxDb:Q8W3K0
Pfam:PF00931Pfam:Q8W3K0PhylomeDB:Q8W3K0PRIDE:Q8W3K0
PRO:PR:Q8W3K0ProteinModelPortal:Q8W3K0Proteomes:UP000006548RefSeq:NP_001077742.1
RefSeq:NP_683441.1SMR:Q8W3K0STRING:3702.AT1G58602.1SUPFAM:SSF52047
SUPFAM:SSF52058SUPFAM:SSF52540TAIR:AT1G58602UniGene:At.52258
UniGene:At.66835UniProt:Q0WV58UniProt:Q8W3K0
Coordinates (TAIR10) chr1:+:21760167..21763765
Molecular Weight (calculated) 131662.00 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.28
Length 1138 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAGELVSFAV NKLWDLLSHE YTLFQGVEDQ VAELKSDLNL LKSFLKDADA KKHTSALVRY CVEEIKDIVY DAEDVLETFV QKEKLGTTSG IRKHIKRLTC
0101: IVPDRREIAL YIGHVSKRIT RVIRDMQSFG VQQMIVDDYM HPLRNREREI RRTFPKDNES GFVALEENVK KLVGYFVEED NYQVVSITGM GGLGKTTLAR
0201: QVFNHDMVTK KFDKLAWVSV SQDFTLKNVW QNILGDLKPK EEETKEEEKK ILEMTEYTLQ RELYQLLEMS KSLIVLDDIW KKEDWEVIKP IFPPTKGWKL
0301: LLTSRNESIV APTNTKYFNF KPECLKTDDS WKLFQRIAFP INDASEFEID EEMEKLGEKM IEHCGGLPLA IKVLGGMLAE KYTSHDWRRL SENIGSHLVG
0401: GRTNFNDDNN NSCNYVLSLS FEELPSYLKH CFLYLAHFPE DYEIKVENLS YYWAAEEIFQ PRHYDGEIIR DVGDVYIEEL VRRNMVISER DVKTSRFETC
0501: HLHDMMREVC LLKAKEENFL QITSNPPSTA NFQSTVTSRR LVYQYPTTLH VEKDINNPKL RSLVVVTLGS WNMAGSSFTR LELLRVLDLV QAKLKGGKLA
0601: SCIGKLIHLR YLSLEYAEVT HIPYSLGNLK LLIYLNLHIS LSSRSNFVPN VLMGMQELRY LALPSLIERK TKLELSNLVK LETLENFSTK NSSLEDLRGM
0701: VRLRTLTIEL IEETSLETLA ASIGGLKYLE KLEIDDLGSK MRTKEAGIVF DFVHLKRLRL ELYMPRLSKE QHFPSHLTTL YLQHCRLEED PMPILEKLLQ
0801: LKELELGHKS FSGKKMVCSS CGFPQLQKLS ISGLKEWEDW KVEESSMPLL LTLNIFDCRK LKQLPDEHLP SHLTAISLKK CGLEDPIPTL ERLVHLKELS
0901: LSELCGRIMV CTGGGFPQLH KLDLSELDGL EEWIVEDGSM PRLHTLEIRR CLKLKKLPNG FPQLQNLHLT EVEEWEEGMI VKQGSMPLLH TLYIWHCPKL
1001: PGEQHFPSHL TTVFLLGMYV EEDPMRILEK LLHLKNVSLF QSFSGKRMVC SGGGFPQLQK LSIREIEWEE WIVEQGSMPL LHTLYIGVCP NLKELPDGLR
1101: FIYSLKNLIV SKRWKKRLSE GGEDYYKVQH IPSVEFDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)