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AT1G58400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (CC-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58390.1); Has 15348 Blast hits to 14299 proteins in 466 species: Archae - 2; Bacteria - 339; Metazoa - 861; Fungi - 58; Plants - 13939; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG4658EMBL:AB077822EMBL:AC082643
EMBL:AF039380EMBL:CP002684EMBL:JN389445EnsemblPlants:AT1G58400
EnsemblPlants:AT1G58400.1entrez:842209ExpressionAtlas:Q8W3K3Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:842209GO:GO:0005524GO:GO:0006952
GO:GO:0043531Gramene:AT1G58400.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF549
InParanoid:Q8W3K3InterPro:IPR002182InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT1G58400ncoils:CoilPaxDb:Q8W3K3Pfam:PF00931
Pfam:Q8W3K3PhylomeDB:Q8W3K3PIR:G96617PRIDE:Q8W3K3
PRO:PR:Q8W3K3ProteinModelPortal:Q8W3K3Proteomes:UP000006548RefSeq:NP_176136.1
SMR:Q8W3K3STRING:3702.AT1G58400.1SUPFAM:SSF52058SUPFAM:SSF52540
TAIR:AT1G58400UniGene:At.52258UniProt:G1JSH4UniProt:Q8W3K3
Coordinates (TAIR10) chr1:-:21696165..21699118
Molecular Weight (calculated) 104541.00 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.28
Length 900 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEAIVSFGV EKLWDRLTQE YEQFQGVEDR IAELKSNLNL LKSFLKDAEA KKNTSQMVRH CVEEIKEIVY DTENMIETFI LKEAARKRSG IIRRITKLTC
101: IKVHRWEFAS DIGGISKRIS KVIQDMHSFG VQQMISDGSQ SSHLLQERER EMRQTFSRGY ESDFVGLEVN VKKLVGYLVE EDDIQIVSVT GMGGLGKTTL
201: ARQVFNHEDV KHQFDRLAWV CVSQEFTRKN VWQMILQNLT SRETKDEILQ MEEAELHDEL FQLLETSKSL IVFDDIWKEE DWGLINPIFP PKKETIAMHG
301: NRRYVNFKPE CLTILESWIL FQRIAMPRVD ESEFKVDKEM EMMGKQMIKY CGGLPLAVKV LGGLLAAKYT FHDWKRLSEN IGCHIVGRTD FSDGNNSSVY
401: HVLSLSFEEL PSYLKHCFLY LAHFPEDHNI KVEKLSYCWA AEGILEPRHY HGQTIRDVGE SYIEELVRRN MVIAERDVTT LRFEACHLHD MMREVCLLKA
501: KEENFVQIAS ILPPTANSQY PGTSRRFVSQ NPTTLHVSRD INNPKLQSLL IVWENRRKSW KLLGSSFIRL ELLRVLDLYK AKFEGRNLPS GIGKLIHLRY
601: LNLDLARVSR LPSSLGNLRL LIYLDINVCT KSLFVPNCLM GMHELRYLRL PFNTSKEIKL GLCNLVNLET LENFSTENSS LEDLRGMVSL RTLTIGLFKH
701: ISKETLFASI LGMRHLENLS IRTPDGSSKF KRIMEDGIVL DAIHLKQLNL RLYMPKLPDE QHFPSHLTSI SLDGCCLVED PLPILEKLLE LKEVRLDFRA
801: FCGKRMVSSD GGFPQLHRLY IWGLAEWEEW IVEEGSMPRL HTLTIWNCQK LKQLPDGLRF IYSIKDLDMD KKWKEILSEG GEEYYKVQHI PSVKFEKDYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)