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AT1G58270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23990937 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRAF-like family protein
Curator
Summary (TAIR10)
ZW9 mRNA, complete cds
Computational
Description (TAIR10)
ZW9; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G28220.1); Has 867 Blast hits to 740 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 2; Plants - 662; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AB028194EMBL:AC008051
EMBL:AF332419EMBL:AF419580EMBL:CP002684EnsemblPlants:AT1G58270
EnsemblPlants:AT1G58270.1entrez:842196Gene3D:2.60.210.10GeneID:842196
GO:GO:0009506GO:GO:0016021Gramene:AT1G58270.1HOGENOM:HOG000015142
InterPro:IPR002083InterPro:IPR008974KEGG:ath:AT1G58270OMA:NEQNIRD
Pfam:PF00917Pfscan:PS50144PhylomeDB:Q9SLV3PIR:T52445
PROSITE:PS50144Proteomes:UP000006548RefSeq:NP_564729.1SMART:SM00061
STRING:3702.AT1G58270.1SUPFAM:SSF49599TAIR:AT1G58270tair10-symbols:ZW9
TMHMM:TMhelixUniGene:At.445UniProt:Q9SLV3
Coordinates (TAIR10) chr1:-:21612394..21614089
Molecular Weight (calculated) 45037.70 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.33
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSEEKKSRN YGSIFVYCFF CFVLIVEVAR FAKPYINLQN LIETEAVVEE GFMAVGNSGN LPCGSSKPSS ASVRAHDEQK LSQAVTTDTR TRPPNSYCVK
101: FQSFVTMAKQ VKENGGKYES RPFSVGGYNW TLLIYPVIYI PTDSGGYVSI YVRVDNSSLI TNPKDVYAEI TFLAYKSSTD KYQISQETEA QRFHLFKQQW
201: GLLQFLPIYY FENPAYGYFF EGESVVFGVD INIVKPFENW EVFSNEQNIR DPIFEWRLTK FSTRFLDSYT SDSFSSGGRN WALKVYPNGV GNATGNSLSL
301: YLLSDQSNDK GYVEAKLRVI DQIQSNNFEK KVAAWPNATE NGWGFDRFLS FADIKNTSKG FLVNDTLKLE VQILSFSKTD YYSHQSSLNV LTGDST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)