AT1G56230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1399) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 151 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 18; Plants - 111; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21046111..21048959 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86025.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.45 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||
| Length | 752 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLERSEFVD GVAARSLSEI SEVDAVRIGG DIISSARRLI ALLRSVGDCQ WLHHPPVIAE AIRRYDELWM PLISDLTVGL KPPMILPPLD VEWVWFCHCL 101: NPVSYSDYCE RRFSKLIGKP AIYDEENEDY AVLQCEKIWS LRYPLESFEN RADPDSLETV SLVNEDIKSL VKKQMFLWEK FSAPYMSETV YLIAARLRYK 201: GFLLILHKFK DEVSSLIPAS DILLMWLTHQ SYPTVYKDDV DEMLEEMTRK VVQVGEKVEK TEVETTKELW DRYFNQPYEK AGGELSIIAN ESGLSNNTMF 301: YWPVSDMDVN TAYKSIRPRF VLELCIFLRL NPKAEQNESI DRSFLRLRVA RCHRKLQLDK KMTDLSSEAS WQKAWHLYCE FGTLGFILES HCDRSRGICF 401: KSGKPEGMIE FPWNDLLRAH SLASGRFLGK QVSVFASVTP PVQAPYLLRF VPDRVTDDSG AMISDSVQRT NNFRPQEGRW LTRTVLDHAG RECFVIRIRV 501: GKGVFKRGGE VPSPVKSEER ITEVRVGSWS YVEGSIGKAP AKVVGTVTPK EPMEDWEAAW EFSTGDELCI RWDSLGTISE LRLYSRNPGS LVRLLTGRRM 601: QYKGEDEEDD EGFVTVVRST EEDPTEKATA LIDWKHQAVE FLPEEDAVFV LLLSVSILRS VTHKRREDVG KLLVRKRITE ATGERDWGSV IVDASSTNVS 701: SSSSPYVEPW YRNSGKVMAM EEKAQVARYP YPVMSYSNVD GGDNLYKHVI FG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)