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AT1G53380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF641)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF641); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT3G14870.1); Has 313 Blast hits to 310 proteins in 37 species: Archae - 0; Bacteria - 16; Metazoa - 2; Fungi - 2; Plants - 281; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKI8eggNOG:ENOG410YB2TEMBL:AC008007EMBL:BT014949
EMBL:BT015837EMBL:CP002684EnsemblPlants:AT1G53380EnsemblPlants:AT1G53380.1
EnsemblPlants:AT1G53380.2EnsemblPlants:AT1G53380.3entrez:841774GeneID:841774
Gramene:AT1G53380.1Gramene:AT1G53380.2Gramene:AT1G53380.3hmmpanther:PTHR31161
hmmpanther:PTHR31161:SF5InterPro:IPR006943KEGG:ath:AT1G53380ncoils:Coil
OMA:HTVKSTRPfam:PF04859PhylomeDB:Q9MAG4PIR:G96573
Proteomes:UP000006548RefSeq:NP_001031180.1RefSeq:NP_001077711.1RefSeq:NP_175744.1
TAIR:AT1G53380UniGene:At.37413UniProt:Q9MAG4
Coordinates (TAIR10) chr1:-:19913341..19914702
Molecular Weight (calculated) 52282.40 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.39
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: METVRPMVVA PKGNKLRRKF AKVLNIHKLT GVAPEGEMKK IKFDSKTAKL SESFYKLEEE YERSQGLEAL LAKLFATVSS IKAAYAQLQH SQSPYDSIGI
101: QKADNLVVAE LKTLSELKQC FMKKQVDPNP ERTLVLAEIQ ELRSLLKTYE IMGKKLESQY KLKDSEIIFL REKLDESMKQ NKLTEKRLNQ SGQLCNPLDN
201: LHLSALNPTH FVTYLHHTVK STRGFVKLMI EQMKLAGWDI SSAANSIHPG VFYYKQDHKC FTFEHFVSNV MFEAFHLPYF STSSESRSYK KKKQSNADRE
301: MFFERFKELR SMKAKDYLTA RPKSRFARFC RAKYLQLIHP KMEQAFFGHL HLRNQVSAGE FPETSLFSGF LEMAKRIWLL HCLALSFERE AEIFRVPKGC
401: RFSEVYMKSV AEEAFFPAAE SSPESEPRVA FTVVPGFRIG KTSIQCEVYL SLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)