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AT1G49360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G57790.1); Has 351 Blast hits to 349 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT7ZeggNOG:ENOG411083QEMBL:AC007504EMBL:AY065188
EMBL:BT001222EMBL:CP002684EnsemblPlants:AT1G49360EnsemblPlants:AT1G49360.1
entrez:841359GeneID:841359Gramene:AT1G49360.1hmmpanther:PTHR20995
hmmpanther:PTHR20995:SF20InParanoid:Q9XIA2InterPro:IPR001810InterPro:IPR011043
KEGG:ath:AT1G49360ncoils:CoilOMA:SNILYFWPaxDb:Q9XIA2
Pfam:PF00646Pfam:Q9XIA2PhylomeDB:Q9XIA2PIR:H96529
PRIDE:Q9XIA2PRO:PR:Q9XIA2ProteinModelPortal:Q9XIA2Proteomes:UP000006548
RefSeq:NP_175361.3SMART:SM00256STRING:3702.AT1G49360.1SUPFAM:0047741
SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT1G49360UniGene:At.19287
UniGene:At.64068UniProt:Q9XIA2
Coordinates (TAIR10) chr1:-:18267338..18269423
Molecular Weight (calculated) 55270.00 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.29
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MACRAKELVS LILYKICNPK RSDSKIEEHV EEVEDLKAEA ELFRSGSKIE KHVEELEDLK AEAELFRLKA ISGTEELKAV ADVKRLRTIL ENNSGTSEEC
101: KGEMLKEDLF LPSDLVRLIL SRLSFKDNIR SSTVCKAWGD IAASVRVKSR RCWLLYHDAF QDKGVSYGFF DPVEKKKTKE MNLPELSKSS GILYSKDGWL
201: LMNDSLSLIA DMYFFNPFTR ERIDLPRNRI MESVHTNFAF SCAPTKKSCL VFGINNISSS VAIKISTWRP GATTWLHEDF PNLFPSYFRR LGNILYSDGL
301: FYTASETALG VFDPTARTWN VLPVQPIPMA PRSIRWMTEY EGHIFLVDAS SLEPMVYRLN RLESVWEKKE TLDGSSIFLS DGSCVMTYGL TGSMSNILYF
401: WSRFINERRS TKSPCPFSRN HPYKYSLYSR SSCEDPEGYY FEYLTWGQKV GVWIEPPHSI SIYDYSILDP SEAVNTEYVF I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)