suba logo
AT1G48175.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.724
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cytidine/deoxycytidylate deaminase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2191 (emb2191); FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: tRNA arginine adenosine deaminase (TAIR:AT1G68720.1); Has 7475 Blast hits to 7473 proteins in 2425 species: Archae - 62; Bacteria - 5225; Metazoa - 126; Fungi - 224; Plants - 142; Viruses - 0; Other Eukaryotes - 1696 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0590eggNOG:KOG1018EMBL:BT014757EMBL:BT014997
EMBL:CP002684EnsemblPlants:AT1G48175EnsemblPlants:AT1G48175.1entrez:841237
GeneID:841237GO:GO:0008270GO:GO:0009451GO:GO:0016787
Gramene:AT1G48175.1hmmpanther:PTHR11079hmmpanther:PTHR11079:SF92HOGENOM:HOG000085051
InterPro:IPR002125InterPro:IPR016192InterPro:IPR016193KEGG:ath:AT1G48175
KO:K15441OMA:INCIDQVPfam:PF00383Pfscan:PS51747
PhylomeDB:Q6IDB6PROSITE:PS00903PROSITE:PS51747Proteomes:UP000006548
RefSeq:NP_564523.3scanprosite:PS00903SMR:Q6IDB6STRING:3702.AT1G48175.1
SUPFAM:SSF53927TAIR:AT1G48175tair10-symbols:emb2191UniGene:At.48288
UniProt:Q6IDB6
Coordinates (TAIR10) chr1:+:17790957..17792066
Molecular Weight (calculated) 20108.00 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.37
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEDHCEDSH NYMGFALHQA KLALEALEVP VGCVFLEDGK VIASGRNRTN ETRNATRHAE MEAIDQLVGQ WQKDGLSPSQ VAEKFSKCVL YVTCEPCIMC
101: ASALSFLGIK EVYYGCPNDK FGGCGSILSL HLGSEEAQRG KGYKCRGGIM AEEAVSLFKC FYEQGNPNAP KPHRPVVQRE RT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)