AT1G43650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nodulin MtN21 /EamA-like transporter family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT5G64700.1); Has 3287 Blast hits to 3271 proteins in 588 species: Archae - 25; Bacteria - 1326; Metazoa - 4; Fungi - 0; Plants - 1237; Viruses - 0; Other Eukaryotes - 695 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:16443861..16446814 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37717.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.43 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.68 | ||||||||||||||||||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMEHKANMA MVFVQIVYAG MPLLSKVAIS QGTNPFVFVF YRQAFAALAL SPFAFFLESS KSSPLSFILL LKIFFISLCG LTLSLNLYYV AIENTTATFA 101: AATTNAIPSI TFVLALLFRL ETVTLKKSHG VAKVTGSMVG MLGALVFAFV KGPSLINHYN SSTIPNGTVP STKNSVKGSI TMLAANTCWC LWIIMQSKVM 201: KEYPAKLRLV ALQCLFSCIQ SAVWAVAVNR NPSVWKIEFG LPLLSMAYCG IMVTGLTYWL QVWAIEKKGP VFTALYTPLA LILTCIVSSF LFKETFYLGS 301: VGGAVLLVCG LYLGLWGKTK EEEIQRYGEK QSQKEIIEEV IIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)