AT1G36070.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G78070.1); Has 24565 Blast hits to 12343 proteins in 577 species: Archae - 60; Bacteria - 7188; Metazoa - 6888; Fungi - 5026; Plants - 2359; Viruses - 0; Other Eukaryotes - 3044 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:13467164..13470386 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47248.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.49 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||
| Length | 418 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQTKDDSDF EDDCETKKME TDTSAQEARN GKDIQGIQWE GFKYNRDEFR ETRLKQYDNF VNILRPSSRE KLDKEHGQVV EKGKNFYDFQ FNTRLVTSTI 101: VHFQLRNLVW ATSKHDVYLM QNYSLMHWSS LLQRGKEVLN VARSVTPTQK LPGLFSEPLS RVQVSSMAVK ENLILLGGFD GELLCKCVNQ PGVAFCTRLS 201: TEDNAITNTV DIYRDPSGSL RLITANNDCK IRVFDAQSFT RVSEFALDWS VNNTSVSPDG KLLAVVGDST ECLISDSHSG KVISSLRGHK DYSFASAWHP 301: NGLILATGNQ DTACRLWDIR NPSESFAVLK GNMGAIRGLK FTPEGRFLAM AEPADFVHIF DTQSGFLQSQ EIDLFGEIAG ISFSPDTEAL YVGVADRTYG 401: SLLEYKRRKD NHYMDSFY |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)