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AT1G32860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 14517339
AmiGO : plasma membrane 17317660
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26748395 (2016): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase_putative (TAIR:AT5G42100.1); Has 2148 Blast hits to 2131 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 2133; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G32860-MONOMERCAZy:GH17EC:3.2.1.39eggNOG:ENOG410IG9Q
eggNOG:ENOG410YA4NEMBL:AC006424EMBL:AY120710EMBL:BT000048
EMBL:CP002684EnsemblPlants:AT1G32860EnsemblPlants:AT1G32860.1entrez:840180
Gene3D:3.20.20.80GeneID:840180Genevisible:Q8L868GO:GO:0005576
GO:GO:0005618GO:GO:0005886GO:GO:0005975GO:GO:0006952
GO:GO:0031225GO:GO:0042973GO:GO:0046658GO:GO:0071555
Gramene:AT1G32860.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF29HOGENOM:HOG000238220
InParanoid:Q8L868InterPro:IPR000490InterPro:IPR013781InterPro:IPR017853
KEGG:ath:AT1G32860ncoils:CoilOMA:KMKDPSKPaxDb:Q8L868
Pfam:PF00332Pfam:Q8L868PhylomeDB:Q8L868PIR:D86453
PRIDE:Q8L868PRO:PR:Q8L868ProteinModelPortal:Q8L868Proteomes:UP000006548
RefSeq:NP_174563.2SMR:Q8L868STRING:3702.AT1G32860.1SUPFAM:SSF51445
TAIR:AT1G32860TMHMM:TMhelixUniGene:At.40046UniProt:Q8L868
Coordinates (TAIR10) chr1:-:11907308..11908803
Molecular Weight (calculated) 45423.60 Da
IEP (calculated) 8.35
GRAVY (calculated) 0.01
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MELTSFHRSS LLFLISLTLI ILPTTTTSIG VNYGQIGDNL PSPTDVIPLI KSIGATKVKL YDANPQILKA FSNTGIEFII GLGNEYLSKM KDPSKALTWI
101: KQNVTPFLPA TNITCITIGN EILALNDSSL TTNLLPAMQG VHSALITAGL SDQISVTTAH SLSILKSSFP PSAGEFQPDL LDSLTPILEF HRKTDSPFLI
201: NAYPFFAYKG NPKEVPLDFV LFQPNQGIVD PATGFHYDNM LFAQIDAVYS ALAAAGFKSL RVEISETGWP SKGDDDEVGA TPENAKRYNG NLIKMMMSGK
301: KTKTPLKPNN DLSIYVFALF NENLKPGPTS ERNYGLFKPD GTQAYSLGFA LNDVVRGASG GGTGGGNSSS GGGRDKSPVF PVSPVAPDSA STGYLAISAS
401: PVTGKRKGKG AILSLVVSML LARHLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)