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AT1G31480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30651313 (2019): plant-type vacuole plant-type vacuole membrane
  • PMID:11826298 (2002): unclear
  • PMID:11826298 (2002): plant-type vacuole
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : shoot gravitropism 2 (SGR2)
Curator
Summary (TAIR10)
encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole.
Computational
Description (TAIR10)
SHOOT GRAVITROPISM 2 (SGR2); FUNCTIONS IN: phospholipase A1 activity; INVOLVED IN: gravitropism, negative gravitropism, detection of gravity, amyloplast organization; LOCATED IN: plant-type vacuole membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDHD (InterPro:IPR004177); Has 1169 Blast hits to 760 proteins in 179 species: Archae - 0; Bacteria - 1; Metazoa - 647; Fungi - 353; Plants - 53; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Protein Annotations
EC:3.1.1.-eggNOG:ENOG410YDSXeggNOG:KOG2308EMBL:AB073133
EMBL:AC027135EMBL:AC074360EMBL:CP002684EnsemblPlants:AT1G31480
EnsemblPlants:AT1G31480.1entrez:840038GeneID:840038Genevisible:Q8W5R2
GO:GO:0005773GO:GO:0008970GO:GO:0009506GO:GO:0009590
GO:GO:0009660GO:GO:0009705GO:GO:0009959GO:GO:0016042
GO:GO:0046872Gramene:AT1G31480.1hmmpanther:PTHR23509hmmpanther:PTHR23509:SF10
HOGENOM:HOG000030188InParanoid:Q8W5R2InterPro:IPR004177InterPro:IPR029058
iPTMnet:Q8W5R2KEGG:ath:AT1G31480ncoils:CoilOMA:DYWEEEN
PaxDb:Q8W5R2Pfam:PF02862Pfam:Q8W5R2Pfscan:PS51043
PhylomeDB:Q8W5R2PIR:H86440PRIDE:Q8W5R2PRO:PR:Q8W5R2
PROSITE:PS51043Proteomes:UP000006548RefSeq:NP_174433.2SMART:SM01127
STRING:3702.AT1G31480.1SUPFAM:SSF53474TAIR:AT1G31480tair10-symbols:SGR2
UniGene:At.27398UniProt:Q8W5R2
Coordinates (TAIR10) chr1:+:11266225..11271527
Molecular Weight (calculated) 106321.00 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.70
Length 933 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDRETHLGT REVNETSPDL LKNTPSNIAR LEDVIEQCHG RQKYLAQTRS PSDGSDVRWY FCKVPLAENE LAASVPRTDV VGKSEYFRFG MRDSLAIEAS
101: FLQREDELLS LWWKEYAECS EGPKLQVNSK KKSIETPSEA SVSSSLYEVE EERVGVPVKG GLYEVDLVRR HCFPVYWNGD NRRVLRGHWF ARKGGLDWLP
201: IPETVSEQLE VAYRNKVWRR RSFQPSGLFA ARIDLQGSSL GLHALFTGED DTWEAWLNVD PSGFSGIVGY TGNGIKLRRG YAGSYSPKPT QEELRQQKEE
301: EMDDYCSQVP VRHLVFMVHG IGQKGEKSNL VDDVGNFRQI TAALAERHLT SHQLSTQRVL FIPCQWRKGL KLSGEAAVDK CTLDGVRRFR EMLSATVHDV
401: LYYMSPIYCQ AIIDSVSKQL NRLYLKFLKR NPDYVGKISI YGHSLGSVLS YDILCHQHNL SSPFPMDSVY KKFFPDEESP PTPAKADKPC SSHPSSNFEP
501: EKSDQLNNPE KITGQDNNTM AKEPTVLEHH DVIQEDPSLI SDSVVANVGL ERRGGQEDDH HDSSGAISSQ DVPDGADCRT PDSPSCSQEQ SWDKESVNSN
601: NEERIKLLQD EVNSLRSKVA QLLSENARIL SDEKAKTSVA PKELNNEKVQ TEDADAPTSF TPFIKYQKLE FKVDTFFAVG SPLGVFLALR NIRLGIGKGK
701: DYWEEENAIE EMPACRRMFN IFHPYDPVAY RVEPLVCKEY LPERPVIIPY HRGGKRLHIG LQDFREDFAA RSQRIMNHFD SVRTRVLTIC QSKSADNLDE
801: MEETDDEKDD RSYGSLMIER LTGTRDGRID HMLQEKTFEH PYLQAIGAHT NYWRDQDTAL FIIKHLYREL PDGPNSPTES TEGDDSPKDS SRPHSWIDRR
901: EADYDDEELP LTFSDKQITR SFSAEAKKYL KKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)