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AT1G28310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBF-binding protein 3 (TAIR:AT3G55370.2); Has 1299 Blast hits to 1242 proteins in 95 species: Archae - 0; Bacteria - 24; Metazoa - 66; Fungi - 20; Plants - 1091; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY2XeggNOG:ENOG410YZTIEMBL:AC021044EMBL:BX816643
EMBL:CP002684EnsemblPlants:AT1G28310EnsemblPlants:AT1G28310.1entrez:839725
ExpressionAtlas:Q9FZA4GeneID:839725GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0046872hmmpanther:PTHR31992
hmmpanther:PTHR31992:SF8HOGENOM:HOG000097069InParanoid:Q9FZA4InterPro:IPR003851
PaxDb:Q9FZA4Pfam:PF02701Pfam:Q9FZA4Pfscan:PS50884
PhylomeDB:C0SUX9PhylomeDB:Q9FZA4PIR:D86409PRIDE:Q9FZA4
PRO:PR:Q9FZA4ProDom:PD007478PROSITE:PS01361PROSITE:PS50884
ProteinModelPortal:Q9FZA4Proteomes:UP000006548RefSeq:NP_174152.3scanprosite:PS01361
TAIR:AT1G28310UniGene:At.40918UniProt:C0SUX9UniProt:Q9FZA4
Coordinates (TAIR10) chr1:-:9912534..9913469
Molecular Weight (calculated) 34022.60 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.70
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSKNMIVAS SHQQQQQQQP QQPQPQLKCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGSYRKNK RVKRPSTATT TTASTVSTTN
101: SSSPNNPHQI SHFSSMNHHP LFYGLSDHMS SCNNNLPMIP SRFSDSSKTC SSSGLESEFL SSGFSSLSAL GLGLPHQMSH DHTINGSFIN NSTTNKPFLL
201: SGLFGSSMSS SSTLLQHPHK PMNNGGDMLG QSHLQTLASL QDLHVGGNNE DMKYKEGKLD QISGNINGFM SSSSSLDPSN YNNMWNNASV VNGAWLDPTN
301: NNVGSSLTSL I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)