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AT1G27980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18643979 (2008): endoplasmic reticulum
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dihydrosphingosine phosphate lyase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dihydrosphingosine phosphate lyase (DPL1); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: sphingolipid catabolic process, cellular amino acid metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase (TAIR:AT5G17330.1); Has 6215 Blast hits to 6205 proteins in 1686 species: Archae - 244; Bacteria - 4383; Metazoa - 292; Fungi - 491; Plants - 296; Viruses - 3; Other Eukaryotes - 506 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G27980-MONOMERBioCyc:MetaCyc:AT1G27980-MONOMERBRENDA:4.1.2.27EC:4.1.2.27
eggNOG:COG0076eggNOG:KOG1383EMBL:AB175035EMBL:AC069471
EMBL:AF360166EMBL:AY085442EMBL:AY113914EMBL:CP002684
EnsemblPlants:AT1G27980EnsemblPlants:AT1G27980.1entrez:839691Gene3D:3.40.640.10
GeneID:839691Genevisible:Q9C509GO:GO:0005783GO:GO:0005789
GO:GO:0008117GO:GO:0016020GO:GO:0016021GO:GO:0016831
GO:GO:0019752GO:GO:0030149GO:GO:0030170Gramene:AT1G27980.1
gramene_pathway:2.1.1.-gramene_pathway:PWY-6483hmmpanther:PTHR11999hmmpanther:PTHR11999:SF5
HOGENOM:HOG000190693InParanoid:Q9C509InterPro:IPR002129InterPro:IPR015421
InterPro:IPR015424KEGG:ath:AT1G27980KO:K01634OMA:CTLKEGM
PaxDb:Q9C509Pfam:PF00282Pfam:Q9C509PhylomeDB:Q9C509
PIR:C86405PRIDE:Q9C509PRO:PR:Q9C509ProteinModelPortal:Q9C509
Proteomes:UP000006548Reactome:R-ATH-1660661RefSeq:NP_174119.1SMR:Q9C509
STRING:3702.AT1G27980.1SUPFAM:SSF53383TAIR:AT1G27980tair10-symbols:ATDPL1
tair10-symbols:DPL1TMHMM:TMhelixUniGene:At.17690UniGene:At.66881
UniPathway:UPA00222UniProt:Q9C509
Coordinates (TAIR10) chr1:+:9748812..9752618
Molecular Weight (calculated) 59481.40 Da
IEP (calculated) 8.08
GRAVY (calculated) 0.02
Length 544 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSFSYSSMK SMLIQARGSL NSRLSEFEPL VLLLVPLVSL FLAQIIGSVF GVVHEKGLKA CLIGFIMGLL KMIPGVQNYI DAEKQKVVDQ LQSGSSSKKK
101: NKTEVLPVKG LGVEVLEKME NEKRNDAIWQ GKCSGTVYIG GAESEGHFSL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETASGGQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGITRP EMIIPESGHS AYDKAAQYFK IKLWRVPVDK DFRADVKATR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PPFDFSVQGV TSISVDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLQNTSKIM EASKRLEEGV REIHELFVIG KPDMTIVAFG SKALDIFEVN DIMSSKGWHL NALQRPNSIH ICITLQHVPV VDDFLRDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)