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AT1G27350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosome associated membrane protein RAMP4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosome associated membrane protein RAMP4; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: Ribosome associated membrane protein RAMP4 (TAIR:AT1G27330.1); Has 348 Blast hits to 348 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 210; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411221UeggNOG:KOG3491EMBL:AK227499EMBL:BT002916
EMBL:BT004351EMBL:BT004571EMBL:CP002684EnsemblPlants:AT1G27330.1
EnsemblPlants:AT1G27350EnsemblPlants:AT1G27350.1entrez:839622entrez:839624
GeneID:839622GeneID:839624GO:GO:0005783GO:GO:0006979
GO:GO:0016021Gramene:AT1G27330.1Gramene:AT1G27350.1hmmpanther:PTHR15601
hmmpanther:PTHR15601:SF4InterPro:IPR010580KEGG:ath:AT1G27330KEGG:ath:AT1G27350
OMA:KKGSQYPPANTHER:PTHR15601Pfam:PF06624PhylomeDB:Q84K46
Proteomes:UP000006548RefSeq:NP_564277.1RefSeq:NP_564279.1STRING:3702.AT1G27350.1
TAIR:AT1G27330TAIR:AT1G27350TMHMM:TMhelixUniGene:At.22230
UniGene:At.41089UniProt:Q84K46
Coordinates (TAIR10) chr1:-:9498319..9499303
Molecular Weight (calculated) 7523.38 Da
IEP (calculated) 11.02
GRAVY (calculated) 0.03
Length 68 amino acids
Sequence (TAIR10)
(BLAST)
1: MTTSKRLADR KIEKFDKNIL KRGFVPETTT KKGKDYPVGP ILLGFFVFVV IGSSLFQIIR TATSGGMA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)