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AT1G25480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.379
vacuole 0.228
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aluminium activated malate transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aluminium activated malate transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to aluminum ion; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G68600.1); Has 866 Blast hits to 864 proteins in 262 species: Archae - 0; Bacteria - 474; Metazoa - 0; Fungi - 26; Plants - 341; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR8VeggNOG:KOG4711EMBL:AC079281EMBL:CP002684
EnsemblPlants:AT1G25480EnsemblPlants:AT1G25480.1entrez:839134GeneID:839134
GO:GO:0015743GO:GO:0016021Gramene:AT1G25480.1hmmpanther:PTHR31086
hmmpanther:PTHR31086:SF20HOGENOM:HOG000237662InParanoid:Q9C6L8InterPro:IPR020966
iPTMnet:Q9C6L8KEGG:ath:AT1G25480ncoils:CoilOMA:GGSMINE
PaxDb:Q9C6L8Pfam:PF11744Pfam:Q9C6L8PhylomeDB:Q9C6L8
PIR:A86385PRIDE:Q9C6L8PRO:PR:Q9C6L8ProteinModelPortal:Q9C6L8
Proteomes:UP000006548RefSeq:NP_173919.1TAIR:AT1G25480TMHMM:TMhelix
UniGene:At.49915UniProt:Q9C6L8
Coordinates (TAIR10) chr1:+:8948467..8950876
Molecular Weight (calculated) 61722.90 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.07
Length 548 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQTREAFL SRKACSDFGF NDSNIIDDRR SKFRCFRFCS DGITASWKAL YDIGAKLYEM GRSDRRKVYF SVKMGMALAL CSFVIYLKEP LRDASKYAVW
101: AILTVVVVFE YSIGATLVKG FNRAIGTLSA GGLALGIARL SVSAGEFEEL IIIISIFIAG FSASYLKLYP AMKSYEYAFR VFLLTYCIVL VSGNNSRDFF
201: STAYYRFLLI LVGAGICLGV NIFILPIWAG EDLHKLVVKN FKSVANSLEG CVNGYLQCVE YERIPSKILT YQASDDPLYS GYRSVVQSTS QEDSLLDFAV
301: WEPPHGPYKT FHHPWANYVK LSGAVRHCAF MVMAMHGCIL SEIQAAPEKR QAFRQELQRV GNEGAKVLRL FGEKVEKMEK LSPGNVLKDV QRAAEELQMK
401: IDSNSFLLVN SESWAAMKEK AEAEEAQQNY HEAKDDESKV IQSLSQIWDN NNNPHHQNQH AGNDSQLWIS TESMMLRNRE NWPSVSFIGG SMINEIESKV
501: YESASSLSLA TFASLLIEFV ARLQNIVNAY EELSTKADFK EQVSETRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)