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AT1G23060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23115248 (2012): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT1G70950.1); Has 449 Blast hits to 419 proteins in 98 species: Archae - 0; Bacteria - 40; Metazoa - 139; Fungi - 21; Plants - 158; Viruses - 3; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4SPeggNOG:ENOG410YW3EEMBL:AY057558EMBL:AY090317
EMBL:CP002684EnsemblPlants:AT1G23060EnsemblPlants:AT1G23060.1entrez:838914
ExpressionAtlas:Q93ZG1GeneID:838914Gramene:AT1G23060.1hmmpanther:PTHR31358
hmmpanther:PTHR31358:SF2HOGENOM:HOG000114715KEGG:ath:AT1G23060OMA:TCTEKDE
PhylomeDB:Q93ZG1Proteomes:UP000006548RefSeq:NP_564188.1STRING:3702.AT1G23060.1
TAIR:AT1G23060UniGene:At.26313UniProt:Q93ZG1
Coordinates (TAIR10) chr1:-:8170946..8172739
Molecular Weight (calculated) 41007.20 Da
IEP (calculated) 10.61
GRAVY (calculated) -0.89
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGEVQDPFN LSLLENSIHS GSVSFGRFEK ESLSWERRSS FSRNIYLEEA ERFSKPGSVT QMRAHFEAHF KKKGIRFPSS VESQTWGEVV HHQTCTEKDE
101: NLWENTSQFG DSCVSFDETI LVNSDDDVHT SISVALERTD IGRIEDEKET KSSSSATRSK PLKNVQKARP YSATNKDSTK KHVVIPKGYS PSSNAKTSVD
201: TKRQKELKPK RIVETVACQA PATSKKTEIL TPLLATREKK TSTNGFSLRS NERAEKKKEE KVEAVVRKAL NLKARPLPKS TQARPQHTST GQAKAKAKAR
301: DDHSSTASCD RSLTNRMAKS KVIINKQKAD MQRSLNGIRP KTSDQTARNS TNIRSLAVRR SAVQVAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)