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AT1G22950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G18210.2); Has 444 Blast hits to 443 proteins in 76 species: Archae - 0; Bacteria - 16; Metazoa - 288; Fungi - 0; Plants - 94; Viruses - 3; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
EC:1.14.11.-eggNOG:ENOG410Y4QUeggNOG:KOG1971EMBL:AF000657
EMBL:CP002684EnsemblPlants:AT1G22950EnsemblPlants:AT1G22950.1entrez:838902
GeneID:838902GO:GO:0005506GO:GO:0016705GO:GO:0031418
GO:GO:0051213Gramene:AT1G22950.1hmmpanther:PTHR24014hmmpanther:PTHR24014:SF4
HOGENOM:HOG000030244InParanoid:Q3ED68InterPro:IPR005123InterPro:IPR006620
KEGG:ath:AT1G22950OMA:VESMERWPaxDb:Q3ED68Pfam:Q3ED68
Pfscan:PS51471PhylomeDB:Q3ED68PIR:F86363PRIDE:Q3ED68
PRO:PR:Q3ED68PROSITE:PS51471ProteinModelPortal:Q3ED68Proteomes:UP000006548
RefSeq:NP_173708.3SMART:SM00702STRING:3702.AT1G22950.1TAIR:AT1G22950
UniGene:At.43074UniGene:At.49905UniProt:Q3ED68
Coordinates (TAIR10) chr1:-:8125291..8127168
Molecular Weight (calculated) 45754.00 Da
IEP (calculated) 7.02
GRAVY (calculated) -0.67
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MCNQTPLRSM ALDSSGKQPE QQQQQQPRAS SGNGEARLKL RRTPNEEHEP ENYEDLPLDY SPSLFTSLER YLPEQLLNST RIDKASFMRD LLLRYSPDTE
101: RVRVLRHKEY RDKIMSSYQR LHGEIYTLDP SSFFAPSFLG AFSRKSEPNF RSSMVESYPG IFTFEMFKPQ FCEMLLAEVE HMEKWVYDSR STIMRPNTMN
201: NFGVVLDDFG FDSMLQKLVD DFISPIAQVL FPEVCGTSLD SHHGYIVEYG KDRDVDLGFH VDDSEVSLNV CLGKQFSGGE LYFRGVRCDK HVNSDSTEKE
301: VYDYSHVPGH AILHRGRHRH GARATTSGHR ANLILWCRSS TFREMKNYQR DFSGWCGGCK LDKQRRQRDS INATKEILAR KAAEKTLVEL ASKSCAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)