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AT1G19540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.753
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NmrA-like negative transcriptional regulator family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 2081 Blast hits to 2077 proteins in 492 species: Archae - 4; Bacteria - 817; Metazoa - 4; Fungi - 543; Plants - 557; Viruses - 7; Other Eukaryotes - 149 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G19540-MONOMEReggNOG:ENOG410JGM8eggNOG:ENOG410ZNGREMBL:BT024779
EMBL:CP002684EnsemblPlants:AT1G19540EnsemblPlants:AT1G19540.1entrez:838541
Gene3D:3.40.50.720GeneID:838541Gramene:AT1G19540.1hmmpanther:PTHR10366
hmmpanther:PTHR10366:SF441HOGENOM:HOG000237415InterPro:IPR008030InterPro:IPR016040
KEGG:ath:AT1G19540OMA:QCHLRLRPfam:PF05368PhylomeDB:Q29PX7
Proteomes:UP000006548RefSeq:NP_173385.1SMR:Q29PX7STRING:3702.AT1G19540.1
SUPFAM:SSF51735TAIR:AT1G19540UniGene:At.47004UniProt:Q29PX7
Coordinates (TAIR10) chr1:+:6765713..6767247
Molecular Weight (calculated) 34367.50 Da
IEP (calculated) 5.27
GRAVY (calculated) 0.02
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSKILVIGA TGLIGKVLVE ESAKSGHATF ALVREASLSD PVKAQLVERF KDLGVTILYG SLSDKESLVK AIKQVDVVIS AVGRFQTEIL NQTNIIDAIK
101: ESGNVKRFLP SEFGNDVDRT VAIEPTLSEF ITKAQIRRAI EAAKIPYTYV VSGCFAGLFV PCLGQCHLRL RSPPRDKVSI YDTGNGKAIV NTEEDIVAYT
201: LKAVDDPRTL NKILYIHPPN YIVSQNDMVG LWEEKIGKTL EKTYVSEEEL LKTIQESKPP MDFLVGLIHT ILVKSDFTSF TIDPSFGVEA SELYPEVKYT
301: SVDEFLNRFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)