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AT1G18630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glycine-rich RNA-binding protein 6
Curator
Summary (TAIR10)
encodes a glycine-rich RNA binding protein.
Computational
Description (TAIR10)
glycine-rich RNA-binding protein 6 (GR-RBP6); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes - 724 (source: NCBI BLink).
Protein Annotations
BioGrid:23683eggNOG:COG0724eggNOG:KOG0118EMBL:AC026238
EMBL:AK227482EMBL:AY085358EMBL:BT005999EMBL:CP002684
EnsemblPlants:AT1G18630EnsemblPlants:AT1G18630.1entrez:838444Gene3D:3.30.70.330
GeneID:838444Genevisible:Q9FZ84GO:GO:0000166GO:GO:0003723
GO:GO:0005739GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0009651Gramene:AT1G18630.1hmmpanther:PTHR24012InParanoid:Q9FZ84
IntAct:Q9FZ84InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT1G18630
OMA:IFRQPRAPaxDb:Q9FZ84Pfam:PF00076Pfam:Q9FZ84
Pfscan:PS50102PhylomeDB:Q9FZ84PIR:A86320PRIDE:Q9FZ84
PRO:PR:Q9FZ84PROSITE:PS50102ProteinModelPortal:Q9FZ84Proteomes:UP000006548
RefSeq:NP_173298.1SMART:SM00360SMR:Q9FZ84STRING:3702.AT1G18630.1
SUPFAM:SSF54928TAIR:AT1G18630tair10-symbols:GR-RBP6UniGene:At.356
UniGene:At.41785UniProt:Q9FZ84
Coordinates (TAIR10) chr1:+:6415226..6416283
Molecular Weight (calculated) 15961.00 Da
IEP (calculated) 10.28
GRAVY (calculated) -0.12
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MHYMGLFSRA GNIFRQPRAL QASNAMLQGN LSLTPSKIFV GGLSPSTDVE LLKEAFGSFG KIVDAVVVLD RESGLSRGFG FVTYDSIEVA NNAMQAMQNK
101: ELDGRIIGVH PADSGGGGGG GGFARRGGYG GGRGGYARGG FGRGGFGGGG YGFVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)