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AT1G17140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.700
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : interactor of constitutive active rops 1
Curator
Summary (TAIR10)
Encodes a ROP/RAC effector, designated interactor of constitutive active ROPs 1 (ICR1), that interacts with GTP-bound ROPs. ICR1 is a scaffold mediating formation of protein complexes that are required for cell polarity. ICR1 is comprised of coiled-coil domains and forms complexes with itself and the exocyst vesicle-tethering complex subunit SEC3.
Computational
Description (TAIR10)
interactor of constitutive active rops 1 (ICR1); BEST Arabidopsis thaliana protein match is: ROP interactive partner 2 (TAIR:AT1G78430.1); Has 53861 Blast hits to 29615 proteins in 2229 species: Archae - 901; Bacteria - 7093; Metazoa - 25838; Fungi - 5211; Plants - 3173; Viruses - 136; Other Eukaryotes - 11509 (source: NCBI BLink).
Protein Annotations
BioGrid:23524eggNOG:ENOG410IZIEeggNOG:ENOG410YKFDEMBL:AC007651
EMBL:AK229284EMBL:AY085543EMBL:BT024727EMBL:CP002684
EnsemblPlants:AT1G17140EnsemblPlants:AT1G17140.1EnsemblPlants:AT1G17140.2entrez:838284
GeneID:838284Genevisible:Q8LE98GO:GO:0005634GO:GO:0005886
GO:GO:0090404GO:GO:2000012Gramene:AT1G17140.1Gramene:AT1G17140.2
hmmpanther:PTHR34224hmmpanther:PTHR34224:SF2HOGENOM:HOG000241537InParanoid:Q8LE98
InterPro:IPR029688iPTMnet:Q8LE98KEGG:ath:AT1G17140ncoils:Coil
OMA:EHELKEGPANTHER:PTHR34224PaxDb:Q8LE98Pfam:Q8LE98
PhylomeDB:Q8LE98PRIDE:Q8LE98PRO:PR:Q8LE98ProteinModelPortal:Q8LE98
Proteomes:UP000006548RefSeq:NP_564015.1RefSeq:NP_973848.1SMR:Q8LE98
STRING:3702.AT1G17140.1TAIR:AT1G17140tair10-symbols:ICR1tair10-symbols:RIP1
UniGene:At.48200UniGene:At.70431UniProt:Q8LE98
Coordinates (TAIR10) chr1:-:5856740..5857861
Molecular Weight (calculated) 38359.70 Da
IEP (calculated) 4.99
GRAVY (calculated) -1.07
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRPRVSELS QRQAPRLRSS SSTSDSNHSN RLITTDQSFK PGVDRKSPRS GGPNSDPLGQ KKLGGRISDL ESQLGQAQEE LRLLKEQLAN AEAVKKQAQD
101: ELHKKSKKPN PLARVEESAT EAERIDRDEI PGDVQKETDV FEVPVEKIAV EEEELRSGND EAEKLVAKED EIKMLKARLY DMEKEHESLG KENESLKNQL
201: SDSASEISNV KANEDEMVSK VSRIGEELEE SRAKTAHLKE KLESMEEAKD ALEAEMKKLR VQTEQWRKAA DAAAAVLSGE FEMNGRDRSG STEKYYAGGF
301: FDPSAGFMDP PGMADDYDDG LGSGKRKSSG MKMFGELWRK KGQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)