AT1G16390.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : organic cation/carnitine transporter 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
organic cation/carnitine transporter 3 (3-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 2 (TAIR:AT1G79360.1); Has 22920 Blast hits to 22877 proteins in 2010 species: Archae - 415; Bacteria - 11427; Metazoa - 4445; Fungi - 4126; Plants - 1629; Viruses - 0; Other Eukaryotes - 878 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:5602921..5604477 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 57395.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 518 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MADSTRPLLS DFNSSESNLP PPRSLEETIE RCIGDFGWAQ FLQAALVSFA WFFDAQQTFI TVFTDSQPMW HCDNSDRVDS VCNTSSSNLC TLPNQTWSWD 101: LNPHVSIISE WGLQCAGSFL KGFPASSFFL GCLIGGLALS TLADSSLGRK NMLLLSCLIM SLSSMLTAFS TSIWVYAFLR FLNGCGRATI GTCALVLSTE 201: LVGKKWRGQV GAMGFFCFTL GFLSLPMLGY INEGNSWRNL YVWTSIPTLI YCCLVRSFVR ESPRWLIVKG RKEEAVSILQ SIASNAITMS FTNLCFEVEN 301: DQSKSNPDVY DALKILVRKS WSFRRLLAAM VVGFGIGMVY YGMPLALTNL NFNLYLGVVF NALSEFPAFL ITFFFIDKIN RRDALIGFTA LSGISSALIA 401: VLGQQLGSLQ IVLELVSFFS ACTAFNMTLI YTIEMFPTCV RNSAISMVRQ ALVFGGVFSP VMVAAGRENQ FWSYGLFGLI IGLCGLFVFG LPETRGSVLC 501: DTMDEEEYKT LAKRQFIG |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)