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AT1G16390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18710496 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : organic cation/carnitine transporter 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
organic cation/carnitine transporter 3 (3-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 2 (TAIR:AT1G79360.1); Has 22920 Blast hits to 22877 proteins in 2010 species: Archae - 415; Bacteria - 11427; Metazoa - 4445; Fungi - 4126; Plants - 1629; Viruses - 0; Other Eukaryotes - 878 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IRHXeggNOG:ENOG410XR6GEMBL:AC006341EMBL:AY078972
EMBL:BT000863EMBL:CP002684EnsemblPlants:AT1G16390EnsemblPlants:AT1G16390.1
entrez:838209GeneID:838209Genevisible:Q9SA38GO:GO:0005524
GO:GO:0006811GO:GO:0009705GO:GO:0016021GO:GO:0022891
GO:GO:0070417Gramene:AT1G16390.1hmmpanther:PTHR24064hmmpanther:PTHR24064:SF242
HOGENOM:HOG000234568InParanoid:Q9SA38InterPro:IPR005828InterPro:IPR020846
KEGG:ath:AT1G16390OMA:AGRENQFPaxDb:Q9SA38Pfam:PF00083
Pfam:Q9SA38Pfscan:PS50850PhylomeDB:Q9SA38PIR:B86299
PRO:PR:Q9SA38PROSITE:PS50850ProteinModelPortal:Q9SA38Proteomes:UP000006548
Reactome:R-ATH-112311Reactome:R-ATH-181430Reactome:R-ATH-2161517Reactome:R-ATH-442660
Reactome:R-ATH-549127RefSeq:NP_173089.1SMR:Q9SA38STRING:3702.AT1G16390.1
SUPFAM:SSF103473TAIR:AT1G16390tair10-symbols:3-Octtair10-symbols:ATOCT3
TMHMM:TMhelixUniGene:At.28085UniProt:Q9SA38
Coordinates (TAIR10) chr1:+:5602921..5604477
Molecular Weight (calculated) 57395.90 Da
IEP (calculated) 5.92
GRAVY (calculated) 0.44
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSTRPLLS DFNSSESNLP PPRSLEETIE RCIGDFGWAQ FLQAALVSFA WFFDAQQTFI TVFTDSQPMW HCDNSDRVDS VCNTSSSNLC TLPNQTWSWD
101: LNPHVSIISE WGLQCAGSFL KGFPASSFFL GCLIGGLALS TLADSSLGRK NMLLLSCLIM SLSSMLTAFS TSIWVYAFLR FLNGCGRATI GTCALVLSTE
201: LVGKKWRGQV GAMGFFCFTL GFLSLPMLGY INEGNSWRNL YVWTSIPTLI YCCLVRSFVR ESPRWLIVKG RKEEAVSILQ SIASNAITMS FTNLCFEVEN
301: DQSKSNPDVY DALKILVRKS WSFRRLLAAM VVGFGIGMVY YGMPLALTNL NFNLYLGVVF NALSEFPAFL ITFFFIDKIN RRDALIGFTA LSGISSALIA
401: VLGQQLGSLQ IVLELVSFFS ACTAFNMTLI YTIEMFPTCV RNSAISMVRQ ALVFGGVFSP VMVAAGRENQ FWSYGLFGLI IGLCGLFVFG LPETRGSVLC
501: DTMDEEEYKT LAKRQFIG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)