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AT1G16040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.414
plasma membrane 0.351
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 280 Blast hits to 280 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 111; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111B1JeggNOG:KOG3144EMBL:AK118838EMBL:AK175134
EMBL:AK175454EMBL:BT024928EMBL:CP002684EnsemblPlants:AT1G16040
EnsemblPlants:AT1G16040.1entrez:838175GeneID:838175GO:GO:0005789
GO:GO:0006506GO:GO:0016021Gramene:AT1G16040.1hmmpanther:PTHR24320
InterPro:IPR009580KEGG:ath:AT1G16040KO:K05287OMA:GSSWTDW
Pfam:PF06699PhylomeDB:Q8GWH6PRO:PR:Q8GWH6Proteomes:UP000006548
Reactome:R-ATH-162710RefSeq:NP_173056.2STRING:3702.AT1G16040.1TAIR:AT1G16040
TMHMM:TMhelixUniGene:At.41905UniProt:Q8GWH6
Coordinates (TAIR10) chr1:+:5504747..5506456
Molecular Weight (calculated) 25065.20 Da
IEP (calculated) 9.38
GRAVY (calculated) 0.62
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MKEAKEKKNP EISVSITIST WGAFAVYVIT GLFLIFGFHV VRNKYSVDLI SDPTLTLRLL WIIEFPIVVI IYSLFRRNPE KCSYFRAVGR SLVGLIAGAL
101: INALGAVSLG APIGMQSLSK TIHWSFLMSV FTVVPATAVL GASWIDWHRI FASLKPIGII EHMLLVPAYG AIIGGWFGAW PMPLDWERPW QEWPICVCYG
201: AIGGYIGGQM VSLLTLLSEH KNLKLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)