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AT1G12760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger, C3HC4 type (RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0; Bacteria - 6; Metazoa - 2638; Fungi - 764; Plants - 5094; Viruses - 23; Other Eukaryotes - 1348 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC025417
EMBL:AY136370EMBL:BT000279EMBL:CP002684EMBL:DQ059089
EnsemblPlants:AT1G12760EnsemblPlants:AT1G12760.1entrez:837832ExpressionAtlas:Q9LN71
Gene3D:3.30.40.10GeneID:837832GO:GO:0004842GO:GO:0008270
GO:GO:0016021GO:GO:0016874hmmpanther:PTHR14155hmmpanther:PTHR14155:SF186
HOGENOM:HOG000240958InParanoid:Q9LN71InterPro:IPR001841InterPro:IPR013083
iPTMnet:Q9LN71OMA:ICVAIEYPaxDb:Q9LN71Pfam:PF13639
Pfam:Q9LN71Pfscan:PS50089PhylomeDB:Q9LN71PRIDE:Q9LN71
PRO:PR:Q9LN71PROSITE:PS50089ProteinModelPortal:Q9LN71Proteomes:UP000006548
RefSeq:NP_172736.2SMART:SM00184SMR:Q9LN71STRING:3702.AT1G12760.1
SUPFAM:SSF57850TAIR:AT1G12760TMHMM:TMhelixUniGene:At.43884
UniPathway:UPA00143UniProt:Q9LN71
Coordinates (TAIR10) chr1:+:4348728..4350512
Molecular Weight (calculated) 45088.40 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.14
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTETTTGNS SLIPASSSSS SSDAIDPAPL LFNGDDNEGN NGGGGGERRS VRRQGLREAA RFLSRASSGR VMREPSMLVR EAAAEQLEER QSDWAYSKPV
101: VVLDIVWNLA FVSVATAILV MSRKEHPIMP LRVWLLGYAL QCVLHMVCVC VEYRRRNRRR TNRTTTTTPP RSRSSSSSSS SSSLEEEALG SRRNSGVQDL
201: SLGHLDTESS SVAKHLESAN TMFSFIWWII GFYWVSAGGQ ELAQESPRIY WLSIVFLGFD VFFVVFCVAL ACVIGIAVCC CLPCIIAVLY AVADQEGASK
301: EDIEQLTKFK FRKLGDANKH TNDEAQGTTE GIMTECGTDS PIEHTLLQED AECCICLSAY EDGTELRELP CGHHFHCSCV DKWLYINATC PLCKYNILKS
401: SNLDREEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)