AT1G11950.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transcription factor jumonji (jmjC) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transcription factor jumonji (jmjC) domain-containing protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:4034747..4038310 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100151.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.03 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||
| Length | 875 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGEVATNGV ILKHNGVKDI SLETCWPEKK KPVEATSLSS GSSDIEEEIS VECPKRVANQ RRKRSKADEI KTKSSRKRKC DDENKCEENE KKQRSSVKKR 101: ATTWKEEEVV VDDEKKCEQQ LQLVPSSKAT SRSRSKKSVS VDTWLVNNEI DVSALSSRSE SELSDSYLKT EYFNDCRSMT RSLKANLGEL AICHQCSKGE 201: RRYLFICTFC EVRLYCFPCI KKWYPHLSTD DILEKCPFCR GTCNCCTCLH SSGLIETSKR KLDKYERFYH LRFLIVAMLP FLKKLCKAQD QEIETEAKVQ 301: DSMASQVDIS ESLCSNEERV FCNHCATSIV DLHRSCPKCS YELCLNCCQE IRGGWLSDRP ECQLQFEYRG TRYIHGEAAE PSSSSVSEDE TKTPSIKWNA 401: DENGSIRCAP KELGGCGDSV LELKRILPVT WMSDLEQKAE TFLASYSIKP PMSYCRCSSD MSSMKRKAAS RDGSSDNYLY SPDSLDVLKQ EELLHFQEHW 501: SKGEPVIVRN ALNNTAGLSW EPMVMWRALC ENVDSAISSN MSDVKAIDCL ANCEVKINTL CFFEGYSKGR TYENFWPEML KLKDWPPSDK FENLLPRHCD 601: EFISALPFQE YSDPRSGILN IATKLPEGLL KPDLGPKTYV AYGTSDELGR GDSVTKLHCD MSDAVNILMH TAEVTLSEEQ RSAIADLKQK HKQQNEKELQ 701: EQNGLEEEEV VSDEIVVYDE TSGALWDIFK REDVPKLEEY LRKHCIEFRH TYCSRVTKVY HPIHDQSYFL TVEHKRKLKA EFGIEPWTFV QKLGEAVFIP 801: AGCPHQVRNL KSCTKVAVDF VSPENIDECL RLTDEFRQLP KNHKAREDKL EIKKMVIYAV EQALKEVETL LLDRS |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)