AT1G11240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3766936..3768212 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22697.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.53 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.47 | ||||||||||||||||||||||||||||
| Length | 200 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGGLHNEEA GSLATPTSAR HIGKRARKNK SLTVSFDEKD LKDFVTGFHK RKKKRRKEAQ KQQEEAFRRK RIEARKNRKL EELMVAGNGE DNEDGEAEDE 101: VDAEDEEAEP DASTSATTMY DTGELKVTVT TSEISREEEE PIRKEKTQST ESGSTAKAST KQPVPVRKTK PMKQSRRRST TKTMKKRDKK KQARGIKTSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)