suba logo
AT1G09540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 61
Curator
Summary (TAIR10)
Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.
Computational
Description (TAIR10)
myb domain protein 61 (MYB61); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1); Has 8976 Blast hits to 8269 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 766; Fungi - 514; Plants - 5880; Viruses - 4; Other Eukaryotes - 1812 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AY063939EMBL:AY096523
EMBL:AY519552EMBL:CP002684EnsemblPlants:AT1G09540EnsemblPlants:AT1G09540.1
entrez:837480Gene3D:1.10.10.60GeneID:837480GO:GO:0001944
GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0009733
GO:GO:0010089GO:GO:0010119GO:GO:0010214GO:GO:0048364
Gramene:AT1G09540.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF465InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G09540KO:K09422
OMA:LTHITNHPfam:PF00249Pfscan:PS51294PhylomeDB:Q8VZQ2
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_172425.2SMART:SM00717
SMR:Q8VZQ2STRING:3702.AT1G09540.1SUPFAM:SSF46689TAIR:AT1G09540
tair10-symbols:ATMYB61tair10-symbols:MYB61UniGene:At.10913UniProt:Q8VZQ2
Coordinates (TAIR10) chr1:+:3086333..3087689
Molecular Weight (calculated) 40893.50 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.73
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)