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AT1G07300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.764
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : josephin protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
josephin protein-related; BEST Arabidopsis thaliana protein match is: JOSEPHIN-like protein (TAIR:AT2G29640.1); Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111I4JeggNOG:KOG2934EMBL:BT010675EMBL:BT010961
EMBL:CP002684EnsemblPlants:AT1G07300EnsemblPlants:AT1G07300.1entrez:837241
GeneID:837241Gramene:AT1G07300.1hmmpanther:PTHR34355hmmpanther:PTHR34355:SF1
HOGENOM:HOG000143364KEGG:ath:AT1G07300OMA:KHLGCKFPhylomeDB:Q6NPG3
Proteomes:UP000006548RefSeq:NP_172210.1STRING:3702.AT1G07300.1TAIR:AT1G07300
UniGene:At.70180UniProt:Q6NPG3
Coordinates (TAIR10) chr1:-:2245914..2246300
Molecular Weight (calculated) 13890.80 Da
IEP (calculated) 11.53
GRAVY (calculated) -0.60
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MSATGIKRSN LNTRPVQRDA SAKQTAIKGP YGKSPGCTTS CGLRLPRKTE VTAAKLIKHL GCKFAKGLRL VVMRKKKRSP PSKVSSFSGR SQPPIIPINN
101: DSHRSEAIED CIQFINSSSS FTRSNSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)