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AT1G06350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.874
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Fatty acid desaturase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06360.1); Has 3426 Blast hits to 3426 proteins in 822 species: Archae - 0; Bacteria - 1532; Metazoa - 799; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 751 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06350-MONOMEREC:1.14.19.-eggNOG:COG1398eggNOG:KOG1600
EMBL:AC068143EMBL:BT005732EMBL:CP002684EnsemblPlants:AT1G06350
EnsemblPlants:AT1G06350.1entrez:837146GeneID:837146Genevisible:Q9LMI4
GO:GO:0005789GO:GO:0006636GO:GO:0016021GO:GO:0016717
Gramene:AT1G06350.1gramene_pathway:1.14.99.-gramene_pathway:PWY-782hmmpanther:PTHR11351
hmmpanther:PTHR11351:SF2HOGENOM:HOG000270353InParanoid:Q9LMI4InterPro:IPR005804
InterPro:IPR015876KEGG:ath:AT1G06350OMA:GFHRYLAPaxDb:Q9LMI4
Pfam:PF00487Pfam:Q9LMI4PhylomeDB:Q9LMI4PIR:C86199
PRINTS:PR00075PRO:PR:Q9LMI4ProteinModelPortal:Q9LMI4Proteomes:UP000006548
Reactome:R-ATH-75105RefSeq:NP_172124.2SMR:Q9LMI4STRING:3702.AT1G06350.1
TAIR:AT1G06350TMHMM:TMhelixUniGene:At.17048UniPathway:UPA00658
UniProt:Q9LMI4
Coordinates (TAIR10) chr1:-:1935510..1936789
Molecular Weight (calculated) 35433.80 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.05
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MCDPTRDDGS SRSRVVSTMQ KRAYFQRQWP LVDVVRASVV VIVHFLCLLA PFNFKWEALR FGLVLFALTT LSITFSFHRN LSHRSFKIPK WLEYPWAYSA
101: VFALQGDPMD WVSIHRFHHQ FTDSDRDPHS PKEGLLFSHI LWIFDTQYIK YKCGGRDNVL DLKKQWFYKF LRRTIAVHIL MFWTILYLYG GLPYLTCGGG
201: VGIFIGYHVT WLVNSACHIW GSRSWNTKDT SRNVWWLSLF TMGESWHNNH HAFESSARQG LEWWQIDITW YLIRLFEVLG IATDVKLPSE LQKQKMALVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)